Detailed information of deep learning profile BP000430.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000430.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR954MUZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.00 0.03 0.00 0.07 0.12 0.05 0.08 0.16 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.02 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.17 0.10 -0.00 0.01 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4110 4058 4074 4280 4304 4084 4169 4263 4055 4060 4202 3755 3887 3680 4594 5193 3144 5737 3016 2075 2384 1914 1242 4038 507 138 1155 6544 561 3201 205 858 3113 3868 6203 4419 5327 4615 3881 3775 4343 3787 4969 7463 5111 3220 3905 3582 4805 4963 ]
C [ 3960 4047 4002 3946 3864 4064 4183 4124 4092 3596 3341 4286 4117 5392 3908 4305 4494 2807 4177 6371 1904 10675 13680 9640 11852 16059 1783 1053 5525 1638 220 981 6303 5058 2195 3654 3194 3425 3704 3363 2552 2292 3493 3282 3758 3495 2694 5674 5484 3941 ]
G [ 4001 3920 3976 3954 3908 3860 3791 3978 3720 4349 4844 4465 4038 3480 3385 3347 3677 4460 6307 2672 8463 2013 750 795 143 61 311 6373 8984 1086 15348 13114 1909 3951 5616 4768 3786 4207 4382 5083 5872 7448 3886 2625 3288 3417 5283 4009 2740 3703 ]
T [ 4371 4417 4390 4262 4366 4434 4299 4077 4575 4437 4055 3936 4400 3890 4555 3597 5127 3438 2942 5324 3691 1840 770 1969 3940 184 13193 2472 1372 10517 669 1489 5117 3565 2428 3601 4135 4195 4475 4221 3675 2915 4094 3072 4285 6310 4560 3177 3413 3835 ]

Hypothetical CWM

   
A [ 0.01 -0.02 0.02 -0.01 -0.04 -0.02 -0.00 -0.04 0.00 -0.06 -0.04 -0.04 0.05 -0.06 -0.03 -0.08 -0.04 -0.01 -0.00 0.02 0.01 0.01 0.01 0.00 -0.00 0.00 -0.00 0.01 0.04 0.01 -0.01 ]
C [ 0.01 0.01 -0.01 0.02 0.07 -0.01 0.09 0.14 0.09 0.12 0.17 0.01 -0.04 0.04 0.06 -0.03 -0.04 0.05 0.04 -0.01 0.01 0.00 0.01 0.00 0.00 -0.01 -0.03 -0.01 -0.01 0.00 0.00 ]
G [ 0.00 0.01 0.02 0.04 -0.00 0.08 -0.03 -0.03 -0.01 -0.08 -0.04 -0.02 0.04 0.10 -0.02 0.17 0.12 -0.02 0.03 0.05 0.02 0.00 0.01 0.02 0.03 0.04 0.05 0.00 -0.03 -0.01 -0.00 ]
T [ -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.05 -0.05 0.02 -0.06 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.01 0.01 0.00 0.00 -0.01 -0.01 0.01 -0.01 0.00 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1096

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 263

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 190

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 148

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages