Detailed information of deep learning profile BP000429.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in prostate gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000429.1
Cell line/tissue: prostate gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR946MNG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.14 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4101 3606 3413 5045 6261 4528 3407 4215 3501 3787 4386 4575 4797 4844 4172 2576 3961 5035 1775 520 12239 1089 2954 15026 247 7163 962 259 455 2675 7454 1826 2517 6524 3249 5422 3911 4563 4187 3779 4800 5964 3789 4597 4892 5272 4754 4683 4699 4683 ]
C [ 4215 3180 4445 5384 3715 3332 2866 4306 6981 6077 5576 4984 4573 3880 4386 5649 3596 1875 13709 17055 831 10113 6614 489 73 131 669 87 734 12917 889 9002 5881 4331 3584 3343 3104 4772 5872 6924 5665 3519 4882 4070 4005 3901 4136 4223 4516 4492 ]
G [ 4412 6119 5881 3271 4222 4160 3838 3945 2847 3218 3843 4050 3931 3586 4413 2623 6045 7654 1215 197 2549 6179 1382 1414 17475 10462 9782 17364 15204 668 8653 5282 1830 5091 4569 3706 7486 4766 4235 2539 2702 4749 4705 4861 4486 3961 3978 4843 4699 4569 ]
T [ 5195 5018 4184 4223 3725 5903 7812 5457 4594 4841 4118 4314 4622 5613 4952 7075 4321 3359 1224 151 2304 542 6973 994 128 167 6510 213 1530 1663 927 1813 7695 1977 6521 5452 3422 3822 3629 4681 4756 3691 4547 4395 4540 4789 5055 4174 4009 4179 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.04 -0.04 -0.02 0.08 -0.05 0.05 -0.06 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.00 0.02 0.05 0.03 -0.01 0.10 0.16 -0.02 0.11 0.05 -0.00 -0.02 -0.05 0.01 -0.03 -0.03 0.11 -0.02 0.06 0.04 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.02 0.02 0.15 0.11 0.09 0.15 0.11 -0.02 0.12 0.04 -0.00 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.04 -0.04 -0.04 -0.08 0.02 -0.04 0.00 -0.02 -0.05 -0.02 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1048

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 400

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 242

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 65

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages