Detailed information of deep learning profile BP000429.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in prostate gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000429.1
Cell line/tissue: prostate gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR946MNG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.14 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4179 4009 4174 5055 4789 4540 4395 4547 3691 4756 4681 3629 3822 3422 5452 6521 1977 7695 1813 927 1663 1530 213 6510 167 128 994 6973 542 2304 151 1224 3359 4321 7075 4952 5613 4622 4314 4118 4841 4594 5457 7812 5903 3725 4223 4184 5018 5195 ]
C [ 4569 4699 4843 3978 3961 4486 4861 4705 4749 2702 2539 4235 4766 7486 3706 4569 5091 1830 5282 8653 668 15204 17364 9782 10462 17475 1414 1382 6179 2549 197 1215 7654 6045 2623 4413 3586 3931 4050 3843 3218 2847 3945 3838 4160 4222 3271 5881 6119 4412 ]
G [ 4492 4516 4223 4136 3901 4005 4070 4882 3519 5665 6924 5872 4772 3104 3343 3584 4331 5881 9002 889 12917 734 87 669 131 73 489 6614 10113 831 17055 13709 1875 3596 5649 4386 3880 4573 4984 5576 6077 6981 4306 2866 3332 3715 5384 4445 3180 4215 ]
T [ 4683 4699 4683 4754 5272 4892 4597 3789 5964 4800 3779 4187 4563 3911 5422 3249 6524 2517 1826 7454 2675 455 259 962 7163 247 15026 2954 1089 12239 520 1775 5035 3961 2576 4172 4844 4797 4575 4386 3787 3501 4215 3407 4528 6261 5045 3413 3606 4101 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.02 -0.05 -0.02 0.00 -0.04 0.02 -0.08 -0.04 -0.04 0.04 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.00 0.04 0.12 -0.02 0.11 0.15 0.09 0.11 0.15 0.02 -0.02 0.04 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 0.04 0.06 -0.02 0.11 -0.03 -0.03 0.01 -0.05 -0.02 -0.00 0.05 0.11 -0.02 0.16 0.10 -0.01 0.03 0.05 0.02 0.00 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.06 0.05 -0.05 0.08 -0.02 -0.04 0.04 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1048

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 400

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 242

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 65

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages