Detailed information of deep learning profile BP000428.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in ovary using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000428.1
Cell line/tissue: ovary
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR934GQS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.06 0.09 0.03 0.04 0.09 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.06 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.04 -0.00 0.10 0.05 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.04 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3198 3136 3230 4279 3894 3667 3538 3536 2822 3880 3578 2743 2875 2586 4224 5198 1323 6269 1168 577 1111 1149 149 5666 101 90 698 5450 376 1431 90 851 2610 3297 6510 4159 4945 3744 3254 3170 3916 3829 4797 7186 5132 2770 3416 3169 4304 4338 ]
C [ 4429 4618 4944 3790 3629 4179 4577 4529 4719 2341 2166 3679 4552 7358 3597 4705 4824 1866 4996 8652 504 13780 15465 8894 9485 15521 1161 1240 4990 3036 126 1015 7487 6408 2287 4379 3327 3629 3689 3576 2882 2419 3804 3704 3975 4166 2824 5960 6023 4285 ]
G [ 4469 4296 4098 3893 3661 4031 4020 5052 3097 5933 7288 5993 4922 2844 3253 3499 4108 5790 8341 663 12510 596 84 661 157 88 603 6905 9832 693 15400 12744 1623 3245 5282 3827 3586 4505 5120 5585 6246 7244 4038 2498 3099 3484 5568 4334 2904 4191 ]
T [ 3806 3852 3630 3940 4718 4025 3767 2785 5264 3748 2870 3487 3553 3114 4828 2500 5647 1977 1397 6010 1777 377 204 681 6159 203 13440 2307 704 10742 286 1292 4182 2952 1823 3537 4044 4024 3839 3571 2858 2410 3263 2514 3696 5482 4094 2439 2671 3088 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 -0.03 0.02 -0.01 -0.04 -0.02 -0.00 -0.03 0.01 -0.06 -0.03 -0.03 0.03 -0.03 -0.03 -0.05 -0.02 -0.01 -0.00 0.01 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.02 0.00 0.01 0.02 -0.00 0.02 0.07 -0.02 0.07 0.09 0.05 0.07 0.09 0.01 -0.01 0.03 0.05 -0.01 -0.01 0.03 0.02 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.00 0.01 0.01 0.02 0.03 -0.02 0.07 -0.02 -0.02 0.01 -0.03 -0.01 -0.00 0.03 0.06 -0.02 0.10 0.06 -0.01 0.02 0.03 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.01 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.03 -0.03 -0.04 0.03 -0.03 0.05 -0.01 -0.02 0.02 -0.02 -0.01 0.01 -0.01 -0.02 -0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 206

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 186

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 94

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 21

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages