Detailed information of deep learning profile BP000428.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in ovary using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000428.1
Cell line/tissue: ovary
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR934GQS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.04 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.05 0.10 -0.00 0.04 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.06 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.00 -0.00 0.00 0.09 0.04 0.03 0.09 0.06 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 3088 2671 2439 4094 5482 3696 2514 3263 2410 2858 3571 3839 4024 4044 3537 1823 2952 4182 1292 286 10742 704 2307 13440 203 6159 681 204 377 1777 6010 1397 1977 5647 2500 4828 3114 3553 3487 2870 3748 5264 2785 3767 4025 4718 3940 3630 3852 3806 ]
C [ 4191 2904 4334 5568 3484 3099 2498 4038 7244 6246 5585 5120 4505 3586 3827 5282 3245 1623 12744 15400 693 9832 6905 603 88 157 661 84 596 12510 663 8341 5790 4108 3499 3253 2844 4922 5993 7288 5933 3097 5052 4020 4031 3661 3893 4098 4296 4469 ]
G [ 4285 6023 5960 2824 4166 3975 3704 3804 2419 2882 3576 3689 3629 3327 4379 2287 6408 7487 1015 126 3036 4990 1240 1161 15521 9485 8894 15465 13780 504 8652 4996 1866 4824 4705 3597 7358 4552 3679 2166 2341 4719 4529 4577 4179 3629 3790 4944 4618 4429 ]
T [ 4338 4304 3169 3416 2770 5132 7186 4797 3829 3916 3170 3254 3744 4945 4159 6510 3297 2610 851 90 1431 376 5450 698 90 101 5666 149 1149 1111 577 1168 6269 1323 5198 4224 2586 2875 2743 3578 3880 2822 3536 3538 3667 3894 4279 3230 3136 3198 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.02 0.02 -0.02 -0.01 0.05 -0.03 0.03 -0.04 -0.03 -0.03 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.01 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.03 0.02 -0.01 0.06 0.10 -0.02 0.06 0.03 -0.00 -0.01 -0.03 0.01 -0.02 -0.02 0.07 -0.02 0.03 0.02 0.01 0.01 0.00 0.01 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.02 0.03 -0.01 -0.01 0.05 0.03 -0.01 0.01 0.09 0.07 0.05 0.09 0.07 -0.02 0.07 0.02 -0.00 0.02 0.01 0.00 0.02 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.01 -0.00 -0.01 -0.02 -0.05 -0.03 -0.03 0.03 -0.03 -0.03 -0.06 0.01 -0.03 -0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 206

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 186

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 94

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 21

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages