Detailed information of deep learning profile BP000427.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM23338 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000427.1
Cell line/tissue: GM23338
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR932ZMX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.14 0.04 0.07 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.03 0.00 0.08 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.03 0.00 0.11 0.05 -0.00 0.00 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.04 -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5098 4910 4790 4564 5072 5219 5218 4869 4828 4910 4532 6004 4827 4161 4508 4066 6634 7223 2801 7940 2721 1573 2274 1901 442 6801 403 450 2675 6649 1545 4793 751 2024 3997 5455 6374 5070 5717 5086 5290 5158 4979 5070 5595 6750 5993 4733 4756 4698 ]
C [ 5564 5823 5902 6216 5836 5099 5106 5864 5579 5698 5495 4039 3836 5468 5620 8379 4507 5481 5949 2441 5689 10617 1281 17017 20120 11154 14055 20051 2958 2976 7683 3390 1336 2771 8576 6142 4400 5003 4613 5637 4755 5035 4816 4628 4992 5543 5280 5008 5096 6786 ]
G [ 5408 5176 5200 5199 5148 5434 5413 4915 5150 5909 5158 6140 8084 6560 5828 4459 4356 5007 5235 7515 10482 1839 13720 1432 202 596 172 115 670 7711 9252 2798 17104 13090 3229 4838 6765 5866 5700 5538 5840 6136 6780 7109 5420 4384 4680 5407 5773 5346 ]
T [ 5199 5360 5377 5290 5213 5517 5532 5621 5712 4752 6084 5086 4522 5080 5313 4365 5772 3558 7284 3373 2377 7240 3994 919 505 2718 6639 653 14966 3933 2789 10288 2078 3384 5467 4834 3730 5330 5239 5008 5384 4940 4694 4462 5262 4592 5316 6121 5644 4439 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.00 -0.04 -0.02 0.00 -0.03 0.02 -0.04 -0.03 -0.01 0.04 -0.03 -0.01 -0.06 -0.03 -0.02 -0.00 0.01 0.00 0.00 ]
C [ 0.02 0.02 0.03 0.01 0.02 0.03 -0.01 0.04 0.12 -0.01 0.12 0.14 0.09 0.12 0.14 0.03 -0.01 0.04 0.05 -0.03 -0.02 0.04 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.02 0.01 0.01 0.02 0.04 0.05 0.07 -0.00 0.12 -0.02 -0.03 -0.00 -0.06 -0.03 -0.01 0.04 0.07 -0.01 0.13 0.07 -0.01 0.02 0.03 0.01 0.01 ]
T [ -0.00 -0.00 -0.01 0.01 -0.02 0.02 -0.01 -0.01 0.02 -0.02 -0.04 -0.05 -0.04 0.03 -0.03 0.06 -0.01 -0.01 0.02 -0.02 -0.01 0.01 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 139

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 20

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages