Detailed information of deep learning profile BP000427.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM23338 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000427.1
Cell line/tissue: GM23338
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR932ZMX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.04 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.05 0.11 0.00 0.03 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.08 0.00 0.03 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.07 0.04 0.14 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 4439 5644 6121 5316 4592 5262 4462 4694 4940 5384 5008 5239 5330 3730 4834 5467 3384 2078 10288 2789 3933 14966 653 6639 2718 505 919 3994 7240 2377 3373 7284 3558 5772 4365 5313 5080 4522 5086 6084 4752 5712 5621 5532 5517 5213 5290 5377 5360 5199 ]
C [ 5346 5773 5407 4680 4384 5420 7109 6780 6136 5840 5538 5700 5866 6765 4838 3229 13090 17104 2798 9252 7711 670 115 172 596 202 1432 13720 1839 10482 7515 5235 5007 4356 4459 5828 6560 8084 6140 5158 5909 5150 4915 5413 5434 5148 5199 5200 5176 5408 ]
G [ 6786 5096 5008 5280 5543 4992 4628 4816 5035 4755 5637 4613 5003 4400 6142 8576 2771 1336 3390 7683 2976 2958 20051 14055 11154 20120 17017 1281 10617 5689 2441 5949 5481 4507 8379 5620 5468 3836 4039 5495 5698 5579 5864 5106 5099 5836 6216 5902 5823 5564 ]
T [ 4698 4756 4733 5993 6750 5595 5070 4979 5158 5290 5086 5717 5070 6374 5455 3997 2024 751 4793 1545 6649 2675 450 403 6801 442 1901 2274 1573 2721 7940 2801 7223 6634 4066 4508 4161 4827 6004 4532 4910 4828 4869 5218 5219 5072 4564 4790 4910 5098 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.02 0.02 -0.01 -0.01 0.06 -0.03 0.03 -0.04 -0.05 -0.04 -0.02 0.02 -0.01 -0.01 0.02 -0.02 0.01 -0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.03 0.02 -0.01 0.07 0.13 -0.01 0.07 0.04 -0.01 -0.03 -0.06 -0.00 -0.03 -0.02 0.12 -0.00 0.07 0.05 0.04 0.02 0.01 0.01 0.02 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.03 0.05 0.04 -0.01 0.03 0.14 0.12 0.09 0.14 0.12 -0.01 0.12 0.04 -0.01 0.03 0.02 0.01 0.03 0.02 0.02 ]
T [ 0.00 0.00 0.01 -0.00 -0.02 -0.03 -0.06 -0.01 -0.03 0.04 -0.01 -0.03 -0.04 0.02 -0.03 0.00 -0.02 -0.04 -0.00 0.03 -0.03 0.02 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 139

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 20

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages