Detailed information of deep learning profile BP000426.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000426.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR932XBJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.10 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.06 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4672 4266 4042 5583 7003 5153 4049 4734 4042 4380 4995 5122 5216 5378 4609 3045 4703 5619 2164 831 13048 1626 3496 16513 389 7721 1497 427 650 3425 8087 2117 3158 7281 3669 5975 4685 5273 4783 4544 5359 6432 4430 5386 5523 5939 5463 5331 5461 5374 ]
C [ 4992 3997 5378 6387 4459 4226 3776 5115 8025 7117 6389 5757 5511 4924 5467 6979 4629 2594 15460 19536 1215 11070 7484 695 119 230 998 178 1209 14645 1369 10431 6629 4956 4470 4131 3839 5522 6685 7744 6428 4420 5711 4897 4881 4775 4921 5084 5330 5196 ]
G [ 5316 6858 6787 4102 5024 5056 4778 4906 3654 4042 4747 5043 4946 4559 5304 3382 6622 8935 1734 331 3544 7445 1869 2168 20240 12741 11611 19957 17287 973 10286 6027 2423 6165 5375 4567 8475 5701 5275 3412 3700 5580 5684 5650 5414 4850 4851 5630 5544 5498 ]
T [ 5964 5823 4737 4872 4458 6509 8341 6189 5223 5405 4813 5022 5271 6083 5564 7538 4990 3796 1586 246 3137 803 8095 1568 196 252 6838 382 1798 1901 1202 2369 8734 2542 7430 6271 3945 4448 4201 5244 5457 4512 5119 5011 5126 5380 5709 4899 4609 4876 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.05 0.05 -0.07 -0.04 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.06 0.04 -0.01 0.12 0.18 -0.02 0.12 0.06 0.01 -0.03 -0.06 0.01 -0.04 -0.02 0.14 -0.01 0.07 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.05 0.06 -0.02 -0.02 0.08 0.05 -0.01 0.03 0.19 0.14 0.11 0.17 0.13 -0.02 0.14 0.05 -0.00 0.03 0.02 0.00 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.03 -0.08 -0.03 -0.06 0.06 -0.04 -0.04 -0.08 0.03 -0.04 0.01 -0.03 -0.07 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 406

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 301

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 120

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages