Detailed information of deep learning profile BP000426.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000426.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR932XBJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.17 0.06 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.10 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4876 4609 4899 5709 5380 5126 5011 5119 4512 5457 5244 4201 4448 3945 6271 7430 2542 8734 2369 1202 1901 1798 382 6838 252 196 1568 8095 803 3137 246 1586 3796 4990 7538 5564 6083 5271 5022 4813 5405 5223 6189 8341 6509 4458 4872 4737 5823 5964 ]
C [ 5498 5544 5630 4851 4850 5414 5650 5684 5580 3700 3412 5275 5701 8475 4567 5375 6165 2423 6027 10286 973 17287 19957 11611 12741 20240 2168 1869 7445 3544 331 1734 8935 6622 3382 5304 4559 4946 5043 4747 4042 3654 4906 4778 5056 5024 4102 6787 6858 5316 ]
G [ 5196 5330 5084 4921 4775 4881 4897 5711 4420 6428 7744 6685 5522 3839 4131 4470 4956 6629 10431 1369 14645 1209 178 998 230 119 695 7484 11070 1215 19536 15460 2594 4629 6979 5467 4924 5511 5757 6389 7117 8025 5115 3776 4226 4459 6387 5378 3997 4992 ]
T [ 5374 5461 5331 5463 5939 5523 5386 4430 6432 5359 4544 4783 5273 4685 5975 3669 7281 3158 2117 8087 3425 650 427 1497 7721 389 16513 3496 1626 13048 831 2164 5619 4703 3045 4609 5378 5216 5122 4995 4380 4042 4734 4049 5153 7003 5583 4042 4266 4672 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.07 -0.03 0.01 -0.04 0.03 -0.08 -0.04 -0.04 0.06 -0.06 -0.03 -0.08 -0.03 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.00 0.05 0.14 -0.02 0.13 0.17 0.11 0.14 0.19 0.03 -0.01 0.05 0.08 -0.02 -0.02 0.06 0.05 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.07 -0.01 0.14 -0.02 -0.04 0.01 -0.06 -0.03 0.01 0.06 0.12 -0.02 0.18 0.12 -0.01 0.04 0.06 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.04 -0.07 0.05 -0.05 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.03 0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 406

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 301

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 120

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages