Detailed information of deep learning profile BP000425.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in brain using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000425.1
Cell line/tissue: brain
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR930SOT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.07 0.05 0.14 0.09 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4331 3771 3587 5110 6861 4866 3669 4502 3616 3974 4700 4673 4748 4865 4243 3030 4272 5279 2026 572 11976 1575 3122 15359 309 6279 1720 551 949 3752 6672 2377 3238 6222 3617 5373 4246 5031 4350 4427 5068 5552 4312 4945 4965 5105 5144 4972 4907 4918 ]
C [ 4675 3552 5050 6185 4092 3974 3423 4796 8121 7022 5978 5493 5173 4689 5327 6625 4536 2404 14579 18404 1336 9933 7507 543 77 201 872 317 1670 12377 2090 9123 6067 4468 4122 4000 3897 4993 5937 6640 5667 4544 5182 4648 4616 4796 4773 4857 5103 4854 ]
G [ 4922 6506 6661 3680 4465 4806 4188 4470 3177 3615 4339 4648 4543 4175 4775 3176 6126 8149 1602 311 2624 7200 1755 2079 18876 12670 11504 18061 15166 1361 9014 5276 2564 5858 5269 4601 7598 5312 5248 3678 3934 5122 5218 5224 5312 4698 4721 5292 5163 5013 ]
T [ 5539 5638 4169 4492 4049 5821 8187 5699 4553 4856 4450 4653 5003 5738 5122 6636 4533 3635 1260 180 3531 759 7083 1486 205 317 5371 538 1682 1977 1691 2691 7598 2919 6459 5493 3726 4131 3932 4722 4798 4249 4755 4650 4574 4868 4829 4346 4294 4682 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.07 -0.05 0.04 -0.05 -0.04 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.16 -0.01 0.11 0.05 0.01 -0.02 -0.05 0.01 -0.03 -0.02 0.10 -0.00 0.05 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.03 0.05 -0.02 -0.01 0.07 0.05 -0.00 0.03 0.16 0.11 0.09 0.14 0.11 -0.01 0.10 0.04 -0.00 0.02 0.02 0.01 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.03 -0.06 0.02 -0.03 0.01 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 340

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 166

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages