Detailed information of deep learning profile BP000425.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in brain using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000425.1
Cell line/tissue: brain
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR930SOT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.09 0.14 0.05 0.07 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4682 4294 4346 4829 4868 4574 4650 4755 4249 4798 4722 3932 4131 3726 5493 6459 2919 7598 2691 1691 1977 1682 538 5371 317 205 1486 7083 759 3531 180 1260 3635 4533 6636 5122 5738 5003 4653 4450 4856 4553 5699 8187 5821 4049 4492 4169 5638 5539 ]
C [ 5013 5163 5292 4721 4698 5312 5224 5218 5122 3934 3678 5248 5312 7598 4601 5269 5858 2564 5276 9014 1361 15166 18061 11504 12670 18876 2079 1755 7200 2624 311 1602 8149 6126 3176 4775 4175 4543 4648 4339 3615 3177 4470 4188 4806 4465 3680 6661 6506 4922 ]
G [ 4854 5103 4857 4773 4796 4616 4648 5182 4544 5667 6640 5937 4993 3897 4000 4122 4468 6067 9123 2090 12377 1670 317 872 201 77 543 7507 9933 1336 18404 14579 2404 4536 6625 5327 4689 5173 5493 5978 7022 8121 4796 3423 3974 4092 6185 5050 3552 4675 ]
T [ 4918 4907 4972 5144 5105 4965 4945 4312 5552 5068 4427 4350 5031 4246 5373 3617 6222 3238 2377 6672 3752 949 551 1720 6279 309 15359 3122 1575 11976 572 2026 5279 4272 3030 4243 4865 4748 4673 4700 3974 3616 4502 3669 4866 6861 5110 3587 3771 4331 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.01 -0.03 0.02 -0.06 -0.03 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 0.01 0.02 0.02 -0.00 0.04 0.10 -0.01 0.11 0.14 0.09 0.11 0.16 0.03 -0.00 0.05 0.07 -0.01 -0.02 0.05 0.03 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.05 -0.00 0.10 -0.02 -0.03 0.01 -0.05 -0.02 0.01 0.05 0.11 -0.01 0.16 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.04 -0.05 0.04 -0.05 0.07 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 340

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 166

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages