Detailed information of deep learning profile BP000424.1

  1. Home
  2. Deep Learning Profile > BP000424.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000424.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR928RNP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 0.00 0.05 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4000 5125 6322 4911 3995 4379 3895 4158 4775 4892 4885 5041 4484 3259 4593 5184 2412 1433 11180 1847 3457 15269 428 6641 1983 495 782 3791 7330 2044 3150 6581 3517 5546 4240 4929 4434 4306 4968 5755 4294 4931 5120 5389 5163 5094 5005 4982 5047 4946 ]
C [ 5370 6074 4627 4477 4050 5064 7506 6904 6130 5675 5418 5058 5677 6830 4612 2777 14272 17951 1539 9844 7815 747 116 234 1085 233 1410 13219 1718 9692 6584 4996 4534 4181 4083 5379 6421 7309 6136 4660 5466 4997 4864 4883 4929 5146 5210 5146 5132 5203 ]
G [ 6348 4328 4993 5076 4858 5084 3842 4141 4639 4977 4912 4424 5041 3552 6250 8609 1954 463 3830 7640 2229 2454 19391 12986 11342 19027 16245 1268 9717 5934 2561 6004 5357 4627 8135 5664 5280 3713 4017 5525 5699 5573 5527 4932 5051 5431 5566 5426 5309 5449 ]
T [ 4455 4646 4231 5709 7270 5646 4930 4970 4629 4629 4958 5650 4971 6532 4718 3603 1535 326 3624 842 6672 1703 238 312 5763 418 1736 1895 1408 2503 7878 2592 6765 5819 3715 4201 4038 4845 5052 4233 4714 4672 4662 4969 5030 4502 4392 4619 4685 4575 ]

Hypothetical CWM

   
A [ 0.01 0.01 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.05 0.05 -0.06 -0.05 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.02 0.01 0.02 0.05 0.04 -0.01 0.12 0.19 -0.02 0.11 0.06 -0.01 -0.03 -0.06 0.01 -0.04 -0.03 0.14 -0.01 0.08 0.05 0.04 0.02 0.02 0.02 0.03 0.03 ]
G [ 0.02 0.02 0.02 0.00 0.04 0.06 -0.03 -0.03 0.08 0.06 -0.01 0.04 0.19 0.13 0.11 0.18 0.13 -0.02 0.14 0.06 -0.01 0.03 0.03 0.01 0.05 0.02 0.02 ]
T [ 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.06 -0.03 -0.04 -0.08 0.02 -0.04 0.01 -0.02 -0.06 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 351

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 104

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages