Detailed information of deep learning profile BP000424.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000424.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR928RNP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.17 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.09 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.05 0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4575 4685 4619 4392 4502 5030 4969 4662 4672 4714 4233 5052 4845 4038 4201 3715 5819 6765 2592 7878 2503 1408 1895 1736 418 5763 312 238 1703 6672 842 3624 326 1535 3603 4718 6532 4971 5650 4958 4629 4629 4970 4930 5646 7270 5709 4231 4646 4455 ]
C [ 5449 5309 5426 5566 5431 5051 4932 5527 5573 5699 5525 4017 3713 5280 5664 8135 4627 5357 6004 2561 5934 9717 1268 16245 19027 11342 12986 19391 2454 2229 7640 3830 463 1954 8609 6250 3552 5041 4424 4912 4977 4639 4141 3842 5084 4858 5076 4993 4328 6348 ]
G [ 5203 5132 5146 5210 5146 4929 4883 4864 4997 5466 4660 6136 7309 6421 5379 4083 4181 4534 4996 6584 9692 1718 13219 1410 233 1085 234 116 747 7815 9844 1539 17951 14272 2777 4612 6830 5677 5058 5418 5675 6130 6904 7506 5064 4050 4477 4627 6074 5370 ]
T [ 4946 5047 4982 5005 5094 5163 5389 5120 4931 4294 5755 4968 4306 4434 4929 4240 5546 3517 6581 3150 2044 7330 3791 782 495 1983 6641 428 15269 3457 1847 11180 1433 2412 5184 4593 3259 4484 5041 4885 4892 4775 4158 3895 4379 3995 4911 6322 5125 4000 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.06 -0.02 0.01 -0.04 0.02 -0.08 -0.04 -0.03 0.06 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 ]
C [ 0.02 0.02 0.05 0.01 0.03 0.03 -0.01 0.06 0.14 -0.02 0.13 0.18 0.11 0.13 0.19 0.04 -0.01 0.06 0.08 -0.03 -0.03 0.06 0.04 0.00 0.02 0.02 0.02 ]
G [ 0.03 0.03 0.02 0.02 0.02 0.04 0.05 0.08 -0.01 0.14 -0.03 -0.04 0.01 -0.06 -0.03 -0.01 0.06 0.11 -0.02 0.19 0.12 -0.01 0.04 0.05 0.02 0.01 0.02 ]
T [ 0.00 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.05 -0.06 0.05 -0.05 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 351

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 104

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages