Detailed information of deep learning profile BP000423.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in sigmoid colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000423.1
Cell line/tissue: sigmoid colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR925GDS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.03 -0.00 0.05 0.07 0.02 0.03 0.07 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.03 -0.00 0.08 0.04 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.04 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3595 3484 3545 4814 4349 4079 3853 3921 3068 4272 3943 3080 3166 2861 4645 5715 1556 6700 1386 747 1402 1341 233 6103 135 88 775 5729 421 1710 97 906 2865 3662 7004 4402 5344 4092 3499 3381 4388 4036 5247 7932 5600 3079 3762 3461 4804 4712 ]
C [ 4741 4899 5340 3995 3834 4419 4966 4794 5106 2485 2261 3870 4860 7849 3941 5033 5124 2036 5466 8781 672 14509 16543 9588 10301 16836 1252 1316 5512 2908 101 1012 7944 6744 2425 4655 3547 3883 4050 3842 2995 2510 4046 3954 4338 4334 2890 6498 6539 4573 ]
G [ 4746 4615 4363 4127 3809 4228 4290 5371 3199 6237 7833 6436 5320 3024 3356 3641 4411 6270 8701 892 12997 814 172 689 165 100 572 7572 10548 638 16745 13788 1769 3517 5734 4258 3863 4817 5359 6000 6659 8008 4307 2621 3226 3700 6072 4615 3003 4538 ]
T [ 4135 4219 3969 4281 5225 4491 4108 3131 5844 4223 3180 3831 3871 3483 5275 2828 6126 2211 1664 6797 2146 553 269 837 6616 193 14618 2600 736 11961 274 1511 4639 3294 2054 3902 4463 4425 4309 3994 3175 2663 3617 2710 4053 6104 4493 2643 2871 3394 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.01 -0.02 0.02 -0.01 -0.03 -0.01 0.00 -0.02 0.01 -0.04 -0.02 -0.02 0.02 -0.02 -0.01 -0.03 -0.01 -0.01 -0.00 0.01 0.00 0.01 0.00 0.00 ]
C [ 0.00 0.02 -0.00 0.01 0.01 -0.01 0.02 0.05 -0.02 0.06 0.08 0.04 0.06 0.08 0.01 -0.00 0.02 0.04 -0.01 -0.01 0.03 0.02 -0.00 0.01 0.00 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.00 0.01 0.02 0.03 -0.02 0.06 -0.02 -0.02 0.00 -0.03 -0.00 0.00 0.03 0.05 -0.02 0.08 0.05 -0.01 0.02 0.02 0.01 0.00 0.00 0.01 ]
T [ 0.00 0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.00 -0.01 -0.02 -0.03 0.03 -0.02 0.04 -0.00 -0.01 0.02 -0.02 -0.00 0.01 -0.01 -0.01 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 113

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages