Detailed information of deep learning profile BP000423.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in sigmoid colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000423.1
Cell line/tissue: sigmoid colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR925GDS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.04 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.04 0.08 -0.00 0.03 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.07 0.03 0.02 0.07 0.05 -0.00 0.03 0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 3394 2871 2643 4493 6104 4053 2710 3617 2663 3175 3994 4309 4425 4463 3902 2054 3294 4639 1511 274 11961 736 2600 14618 193 6616 837 269 553 2146 6797 1664 2211 6126 2828 5275 3483 3871 3831 3180 4223 5844 3131 4108 4491 5225 4281 3969 4219 4135 ]
C [ 4538 3003 4615 6072 3700 3226 2621 4307 8008 6659 6000 5359 4817 3863 4258 5734 3517 1769 13788 16745 638 10548 7572 572 100 165 689 172 814 12997 892 8701 6270 4411 3641 3356 3024 5320 6436 7833 6237 3199 5371 4290 4228 3809 4127 4363 4615 4746 ]
G [ 4573 6539 6498 2890 4334 4338 3954 4046 2510 2995 3842 4050 3883 3547 4655 2425 6744 7944 1012 101 2908 5512 1316 1252 16836 10301 9588 16543 14509 672 8781 5466 2036 5124 5033 3941 7849 4860 3870 2261 2485 5106 4794 4966 4419 3834 3995 5340 4899 4741 ]
T [ 4712 4804 3461 3762 3079 5600 7932 5247 4036 4388 3381 3499 4092 5344 4402 7004 3662 2865 906 97 1710 421 5729 775 88 135 6103 233 1341 1402 747 1386 6700 1556 5715 4645 2861 3166 3080 3943 4272 3068 3921 3853 4079 4349 4814 3545 3484 3595 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.00 -0.02 0.02 -0.01 -0.00 0.04 -0.02 0.03 -0.03 -0.02 -0.01 -0.00 0.02 -0.01 -0.01 0.02 -0.01 0.01 0.00 0.00 ]
C [ 0.01 0.00 0.00 0.01 0.02 0.02 -0.01 0.05 0.08 -0.02 0.05 0.03 0.00 -0.00 -0.03 0.00 -0.02 -0.02 0.06 -0.02 0.03 0.02 0.01 0.00 0.00 0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.00 0.02 0.03 -0.01 -0.01 0.04 0.02 -0.00 0.01 0.08 0.06 0.04 0.08 0.06 -0.02 0.05 0.02 -0.01 0.01 0.01 -0.00 0.02 0.00 ]
T [ 0.00 0.00 0.01 0.00 0.01 -0.00 -0.01 -0.01 -0.03 -0.01 -0.02 0.02 -0.02 -0.02 -0.04 0.01 -0.02 0.00 -0.01 -0.03 -0.01 0.02 -0.02 0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 113

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages