Detailed information of deep learning profile BP000422.1

  1. Home
  2. Deep Learning Profile > BP000422.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000422.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR922HGS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.16 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4626 4099 3964 5482 6965 5145 3993 4661 3969 4355 5010 5152 5328 5457 4725 3045 4569 5678 2142 918 13416 1463 3423 16640 330 8238 1212 342 555 3073 8451 1934 2889 7425 3573 6068 4576 5113 4771 4445 5374 6622 4373 5239 5552 6042 5494 5281 5341 5310 ]
C [ 4771 3727 5104 6131 4286 3901 3460 5041 7838 6907 6153 5620 5317 4582 4970 6513 4290 2290 15160 19003 1020 11196 7319 549 70 170 750 101 820 14779 1083 10330 6684 4873 4150 3764 3567 5410 6632 7838 6522 4133 5640 4772 4670 4467 4696 4861 5110 5144 ]
G [ 5115 6781 6566 3856 4751 4814 4538 4663 3395 3751 4522 4845 4629 4153 5277 3181 6797 8733 1558 278 3167 7042 1608 1871 19868 11830 11321 19724 17310 776 9782 5990 2084 5795 5207 4318 8558 5458 4931 2928 3185 5424 5437 5485 5141 4500 4567 5574 5423 5305 ]
T [ 5923 5828 4801 4966 4433 6575 8444 6070 5233 5422 4750 4818 5161 6243 5463 7696 4779 3734 1575 236 2832 734 8085 1375 167 197 7152 268 1750 1807 1119 2181 8778 2342 7505 6285 3734 4454 4101 5224 5354 4256 4985 4939 5072 5426 5678 4719 4561 4676 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.08 -0.03 0.05 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.00 0.11 0.16 -0.02 0.11 0.05 0.01 -0.01 -0.04 0.01 -0.03 -0.02 0.12 -0.01 0.06 0.04 0.04 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.01 0.04 0.05 -0.02 -0.02 0.08 0.06 -0.01 0.02 0.17 0.12 0.10 0.16 0.12 -0.02 0.12 0.04 -0.00 0.03 0.02 0.00 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.06 -0.02 -0.03 -0.07 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 804

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 447

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 303

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages