Detailed information of deep learning profile BP000421.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in Calu3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000421.1
Cell line/tissue: Calu3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR921ERP
Model: BPNet
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Contribution weight matrix (CWM)

A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

A [ 4213 4055 4093 4810 4682 4395 4436 4397 3833 4644 4446 3619 3769 3344 5343 6251 2382 7302 2120 1252 1847 1579 366 5809 234 142 1042 6931 592 2636 207 1175 3236 4402 6996 4897 5445 4642 4290 4090 4791 4489 5498 8018 5816 3664 4269 4005 5178 5186 ]
C [ 4638 4656 4836 4191 4067 4651 4771 4735 4645 3094 2953 4468 4731 7171 3936 4772 5003 2127 5111 8107 1171 14293 16827 10280 11010 17408 1558 1331 6225 2217 238 1255 7442 5825 2577 4217 3610 3957 3971 3856 3075 2787 3974 3812 4105 4179 3135 6061 6177 4437 ]
G [ 4404 4462 4239 4140 4018 4006 4118 4801 3771 5467 6597 5502 4822 3359 3416 3468 4234 5623 8530 1699 11812 1236 290 619 141 84 448 6727 9782 1038 16853 13648 2015 3869 5685 4726 4108 4637 4990 5561 6218 7329 4232 2795 3364 3675 5525 4486 3037 4178 ]
T [ 4613 4695 4700 4727 5101 4816 4543 3935 5619 4663 3872 4279 4546 3994 5173 3377 6249 2816 2107 6810 3038 760 385 1160 6483 234 14820 2879 1269 11977 570 1790 5175 3772 2610 4028 4705 4632 4617 4361 3784 3263 4164 3243 4583 6350 4939 3316 3476 4067 ]

Hypothetical CWM

A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.07 -0.04 -0.03 0.05 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.11 -0.02 0.11 0.15 0.09 0.12 0.16 0.02 -0.02 0.05 0.06 -0.02 -0.03 0.05 0.04 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.02 0.01 0.00 0.01 0.02 0.03 0.05 -0.02 0.11 -0.03 -0.04 -0.01 -0.07 -0.02 -0.01 0.04 0.10 -0.03 0.16 0.11 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.01 -0.01 0.02 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.04 -0.05 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages