Detailed information of deep learning profile BP000421.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Calu3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000421.1
Cell line/tissue: Calu3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR921ERP
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.16 0.07 0.05 0.15 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4067 3476 3316 4939 6350 4583 3243 4164 3263 3784 4361 4617 4632 4705 4028 2610 3772 5175 1790 570 11977 1269 2879 14820 234 6483 1160 385 760 3038 6810 2107 2816 6249 3377 5173 3994 4546 4279 3872 4663 5619 3935 4543 4816 5101 4727 4700 4695 4613 ]
C [ 4178 3037 4486 5525 3675 3364 2795 4232 7329 6218 5561 4990 4637 4108 4726 5685 3869 2015 13648 16853 1038 9782 6727 448 84 141 619 290 1236 11812 1699 8530 5623 4234 3468 3416 3359 4822 5502 6597 5467 3771 4801 4118 4006 4018 4140 4239 4462 4404 ]
G [ 4437 6177 6061 3135 4179 4105 3812 3974 2787 3075 3856 3971 3957 3610 4217 2577 5825 7442 1255 238 2217 6225 1331 1558 17408 11010 10280 16827 14293 1171 8107 5111 2127 5003 4772 3936 7171 4731 4468 2953 3094 4645 4735 4771 4651 4067 4191 4836 4656 4638 ]
T [ 5186 5178 4005 4269 3664 5816 8018 5498 4489 4791 4090 4290 4642 5445 4897 6996 4402 3236 1175 207 2636 592 6931 1042 142 234 5809 366 1579 1847 1252 2120 7302 2382 6251 5343 3344 3769 3619 4446 4644 3833 4397 4436 4395 4682 4810 4093 4055 4213 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.05 0.04 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.02 -0.01 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.11 0.16 -0.03 0.10 0.04 -0.01 -0.02 -0.07 -0.01 -0.04 -0.03 0.11 -0.02 0.05 0.03 0.02 0.01 0.00 0.01 0.02 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.04 0.05 -0.03 -0.02 0.06 0.05 -0.02 0.02 0.16 0.12 0.09 0.15 0.11 -0.02 0.11 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.05 -0.03 -0.04 -0.07 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages