Detailed information of deep learning profile BP000419.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in right lobe of liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000419.1
Cell line/tissue: right lobe of liver
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR911GFJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.14 0.05 0.06 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 -0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4935 4883 4898 5714 5613 5289 5176 5341 4602 5491 5522 4410 4665 4036 6221 7324 2879 8479 2660 1550 2257 2048 545 7049 270 138 1209 8260 641 3033 89 1332 3869 5123 8031 5775 6507 5583 4978 4904 5685 5203 6409 9182 6783 4405 4866 4840 5993 6262 ]
C [ 5301 5434 5482 4786 4740 5293 5457 5466 5295 3590 3335 5078 5420 8195 4661 5393 5852 2587 6064 9120 1347 16412 19439 11571 12525 20438 1950 1448 7133 2744 64 1199 8799 6767 2923 4939 4070 4469 4862 4534 3568 3091 4516 4333 4860 4773 3682 6788 7114 5055 ]
G [ 5189 5090 5020 4764 4672 4653 4795 5546 4361 6331 7377 6520 5426 3878 3963 4152 4859 6443 9654 1874 13662 1526 443 872 176 61 442 7929 11808 868 20385 16425 2240 4298 6843 5469 4796 5390 5705 6250 7136 8619 5082 3386 3999 4196 6331 5256 3594 4798 ]
T [ 5475 5493 5500 5636 5875 5665 5472 4547 6642 5488 4666 4892 5389 4791 6055 4031 7310 3391 2522 8356 3634 914 473 1408 7929 263 17299 3263 1318 14255 362 1944 5992 4712 3103 4717 5527 5458 5355 5212 4511 3987 4893 3999 5258 7526 6021 4016 4199 4785 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.00 -0.03 0.02 -0.07 -0.05 -0.04 0.06 -0.06 -0.03 -0.07 -0.04 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.04 0.11 -0.03 0.10 0.15 0.09 0.12 0.17 0.02 -0.02 0.06 0.08 -0.02 -0.03 0.05 0.03 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.05 -0.02 0.11 -0.03 -0.03 0.00 -0.06 -0.02 -0.01 0.05 0.11 -0.03 0.18 0.12 -0.02 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.04 -0.05 -0.06 0.04 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 578

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 472

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 366

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages