Detailed information of deep learning profile BP000419.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in right lobe of liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000419.1
Cell line/tissue: right lobe of liver
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR911GFJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 -0.00 ]
G [ -0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.06 0.05 0.14 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4785 4199 4016 6021 7526 5258 3999 4893 3987 4511 5212 5355 5458 5527 4717 3103 4712 5992 1944 362 14255 1318 3263 17299 263 7929 1408 473 914 3634 8356 2522 3391 7310 4031 6055 4791 5389 4892 4666 5488 6642 4547 5472 5665 5875 5636 5500 5493 5475 ]
C [ 4798 3594 5256 6331 4196 3999 3386 5082 8619 7136 6250 5705 5390 4796 5469 6843 4298 2240 16425 20385 868 11808 7929 442 61 176 872 443 1526 13662 1874 9654 6443 4859 4152 3963 3878 5426 6520 7377 6331 4361 5546 4795 4653 4672 4764 5020 5090 5189 ]
G [ 5055 7114 6788 3682 4773 4860 4333 4516 3091 3568 4534 4862 4469 4070 4939 2923 6767 8799 1199 64 2744 7133 1448 1950 20438 12525 11571 19439 16412 1347 9120 6064 2587 5852 5393 4661 8195 5420 5078 3335 3590 5295 5466 5457 5293 4740 4786 5482 5434 5301 ]
T [ 6262 5993 4840 4866 4405 6783 9182 6409 5203 5685 4904 4978 5583 6507 5775 8031 5123 3869 1332 89 3033 641 8260 1209 138 270 7049 545 2048 2257 1550 2660 8479 2879 7324 6221 4036 4665 4410 5522 5491 4602 5341 5176 5289 5613 5714 4898 4883 4935 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.05 0.04 -0.06 -0.05 -0.04 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.12 0.18 -0.03 0.11 0.05 -0.01 -0.02 -0.06 0.00 -0.03 -0.03 0.11 -0.02 0.05 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.03 0.05 -0.03 -0.02 0.08 0.06 -0.02 0.02 0.17 0.12 0.09 0.15 0.10 -0.03 0.11 0.04 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.04 -0.07 -0.03 -0.06 0.06 -0.04 -0.05 -0.07 0.02 -0.03 0.00 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 578

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 472

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 366

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages