Detailed information of deep learning profile BP000417.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000417.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR907BES
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.05 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4542 4000 3855 5460 6818 4899 3821 4527 3802 4173 4775 4967 5111 5104 4509 3019 4433 5416 2001 480 13158 1371 3102 16289 238 7784 1298 293 431 3037 8033 1962 2789 7067 3535 5791 4277 5061 4489 4148 5161 6419 4159 5006 5369 5692 5167 5136 5059 5154 ]
C [ 4399 3449 4890 5692 4030 3765 3182 4638 7478 6515 5948 5315 4981 4496 4964 6115 4018 2212 14716 18642 1021 10257 7568 460 64 133 730 67 530 13993 1016 9903 6261 4581 3858 3560 3502 5138 6199 7241 6031 3960 5205 4419 4235 4293 4398 4497 4785 4736 ]
G [ 4774 6573 6093 3637 4544 4400 4163 4343 3187 3494 4195 4419 4172 3809 4624 2972 6184 8094 1334 183 2417 7177 1502 1563 19032 11374 10256 18890 16934 629 9287 5564 1868 5583 4933 4086 8009 5019 4818 2965 3141 5005 5104 5262 4958 4288 4437 5251 5165 4958 ]
T [ 5742 5435 4619 4668 4065 6393 8291 5949 4990 5275 4539 4756 5193 6048 5360 7351 4822 3735 1406 152 2861 652 7285 1145 123 166 7173 207 1562 1798 1121 2028 8539 2226 7131 6020 3669 4239 3951 5103 5124 4073 4989 4770 4895 5184 5455 4573 4448 4609 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.03 0.10 -0.06 0.05 -0.07 -0.06 -0.05 -0.02 0.03 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.01 0.12 0.18 -0.03 0.12 0.06 -0.01 -0.02 -0.07 -0.00 -0.04 -0.03 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.01 -0.00 0.04 0.06 -0.02 -0.03 0.08 0.05 -0.02 0.02 0.18 0.13 0.10 0.17 0.13 -0.03 0.13 0.05 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.06 -0.05 -0.04 -0.08 0.02 -0.05 0.00 -0.02 -0.07 -0.02 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2580

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 228

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 173

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages