Detailed information of deep learning profile BP000417.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000417.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR907BES
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.17 0.05 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4609 4448 4573 5455 5184 4895 4770 4989 4073 5124 5103 3951 4239 3669 6020 7131 2226 8539 2028 1121 1798 1562 207 7173 166 123 1145 7285 652 2861 152 1406 3735 4822 7351 5360 6048 5193 4756 4539 5275 4990 5949 8291 6393 4065 4668 4619 5435 5742 ]
C [ 4958 5165 5251 4437 4288 4958 5262 5104 5005 3141 2965 4818 5019 8009 4086 4933 5583 1868 5564 9287 629 16934 18890 10256 11374 19032 1563 1502 7177 2417 183 1334 8094 6184 2972 4624 3809 4172 4419 4195 3494 3187 4343 4163 4400 4544 3637 6093 6573 4774 ]
G [ 4736 4785 4497 4398 4293 4235 4419 5205 3960 6031 7241 6199 5138 3502 3560 3858 4581 6261 9903 1016 13993 530 67 730 133 64 460 7568 10257 1021 18642 14716 2212 4018 6115 4964 4496 4981 5315 5948 6515 7478 4638 3182 3765 4030 5692 4890 3449 4399 ]
T [ 5154 5059 5136 5167 5692 5369 5006 4159 6419 5161 4148 4489 5061 4277 5791 3535 7067 2789 1962 8033 3037 431 293 1298 7784 238 16289 3102 1371 13158 480 2001 5416 4433 3019 4509 5104 5111 4967 4775 4173 3802 4527 3821 4899 6818 5460 3855 4000 4542 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.02 -0.07 -0.02 0.00 -0.05 0.02 -0.08 -0.04 -0.05 0.06 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.05 0.13 -0.03 0.13 0.17 0.10 0.13 0.18 0.02 -0.02 0.05 0.08 -0.03 -0.02 0.06 0.04 -0.00 0.01 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.03 -0.04 -0.00 -0.07 -0.02 -0.01 0.06 0.12 -0.03 0.18 0.12 -0.01 0.04 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.03 -0.02 -0.05 -0.06 -0.07 0.05 -0.06 0.10 -0.03 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.02 -0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2580

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 228

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 173

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages