Detailed information of deep learning profile BP000416.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000416.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR904RIA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.05 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4119 3713 3594 5033 6480 4616 3551 4211 3561 3929 4455 4658 4763 4832 4239 2829 4133 5131 1964 662 12053 1276 2999 15121 277 7240 1242 351 554 3014 7537 1806 2679 6665 3323 5505 4077 4745 4182 4010 4810 6005 3926 4725 4975 5345 4870 4769 4833 4795 ]
C [ 4430 3495 4754 5668 3921 3671 3156 4590 7330 6376 5689 5167 4857 4354 4836 6093 3939 2189 14096 17575 996 10092 6984 539 77 216 773 140 983 13023 1183 9388 6165 4623 3768 3566 3482 4953 6129 7000 5934 3866 5084 4426 4275 4255 4387 4497 4708 4730 ]
G [ 4708 6301 6048 3601 4474 4521 4214 4336 3136 3416 4252 4422 4280 3981 4593 2991 6132 7973 1336 249 2972 6709 1626 1877 18209 11046 10434 17966 15581 903 8947 5533 1974 5313 5006 4118 7813 5101 4734 2940 3154 4983 5084 5127 4879 4308 4368 5106 5051 4918 ]
T [ 5462 5210 4323 4417 3844 5911 7798 5582 4692 4998 4323 4472 4819 5552 5051 6806 4515 3426 1323 233 2698 642 7110 1182 156 217 6270 262 1601 1779 1052 1992 7901 2118 6622 5530 3347 3920 3674 4769 4821 3865 4625 4441 4590 4811 5094 4347 4127 4276 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.09 -0.05 0.06 -0.07 -0.05 -0.05 -0.02 0.02 -0.03 -0.03 0.03 -0.02 0.02 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.12 0.18 -0.04 0.11 0.05 -0.02 -0.03 -0.07 -0.01 -0.05 -0.04 0.13 -0.03 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.04 0.06 -0.03 -0.03 0.08 0.05 -0.03 0.02 0.18 0.13 0.10 0.18 0.13 -0.03 0.14 0.04 -0.01 0.03 0.02 -0.00 0.04 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.06 -0.04 -0.04 -0.09 0.03 -0.05 0.00 -0.03 -0.07 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 476

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 140

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages