Detailed information of deep learning profile BP000416.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000416.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR904RIA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.05 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4276 4127 4347 5094 4811 4590 4441 4625 3865 4821 4769 3674 3920 3347 5530 6622 2118 7901 1992 1052 1779 1601 262 6270 217 156 1182 7110 642 2698 233 1323 3426 4515 6806 5051 5552 4819 4472 4323 4998 4692 5582 7798 5911 3844 4417 4323 5210 5462 ]
C [ 4918 5051 5106 4368 4308 4879 5127 5084 4983 3154 2940 4734 5101 7813 4118 5006 5313 1974 5533 8947 903 15581 17966 10434 11046 18209 1877 1626 6709 2972 249 1336 7973 6132 2991 4593 3981 4280 4422 4252 3416 3136 4336 4214 4521 4474 3601 6048 6301 4708 ]
G [ 4730 4708 4497 4387 4255 4275 4426 5084 3866 5934 7000 6129 4953 3482 3566 3768 4623 6165 9388 1183 13023 983 140 773 216 77 539 6984 10092 996 17575 14096 2189 3939 6093 4836 4354 4857 5167 5689 6376 7330 4590 3156 3671 3921 5668 4754 3495 4430 ]
T [ 4795 4833 4769 4870 5345 4975 4725 3926 6005 4810 4010 4182 4745 4077 5505 3323 6665 2679 1806 7537 3014 554 351 1242 7240 277 15121 2999 1276 12053 662 1964 5131 4133 2829 4239 4832 4763 4658 4455 3929 3561 4211 3551 4616 6480 5033 3594 3713 4119 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.07 -0.03 0.00 -0.05 0.03 -0.09 -0.04 -0.04 0.06 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.04 -0.00 0.02 0.03 -0.01 0.04 0.14 -0.03 0.13 0.18 0.10 0.13 0.18 0.02 -0.03 0.05 0.08 -0.03 -0.03 0.06 0.04 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.03 0.13 -0.04 -0.05 -0.01 -0.07 -0.03 -0.02 0.05 0.11 -0.04 0.18 0.12 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.02 -0.02 0.03 -0.03 -0.03 0.02 -0.02 -0.05 -0.05 -0.07 0.06 -0.05 0.09 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 476

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 140

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages