Detailed information of deep learning profile BP000415.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in progenitor cell of endocrine pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000415.1
Cell line/tissue: progenitor cell of endocrine pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR901NIN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.11 0.18 0.07 0.10 0.21 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.20 0.12 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4716 4418 4536 4702 4770 4535 4560 4644 4321 4684 4762 4122 4199 3772 5333 6136 3192 7200 3025 1988 2285 1935 710 4741 348 189 1500 7070 706 3836 294 1204 3600 4531 6655 4896 5768 5093 4556 4385 4890 4455 5560 7721 5836 3907 4403 4233 5358 5689 ]
C [ 5124 5356 5303 4959 4991 5395 5331 5388 5158 4541 4206 5435 5428 7451 4905 5472 6065 3147 5109 8810 1920 14022 17888 12020 13763 19091 2402 1796 7165 3050 442 1531 8144 6295 3201 4961 4279 4629 4888 4474 3705 3328 4640 4602 4757 4722 3820 6603 6802 4978 ]
G [ 5057 5239 4963 5035 4962 4832 4967 5136 4851 5623 6320 5747 5083 4345 4175 4300 4618 5755 8855 2930 11538 2413 498 965 187 120 532 7797 10274 1410 18127 15084 2553 4758 6857 5621 4857 5339 5525 6211 6959 8397 5029 3713 4289 4453 6225 5255 3724 4714 ]
T [ 4782 4666 4877 4983 4956 4917 4821 4511 5349 4831 4391 4375 4969 4111 5266 3771 5804 3577 2690 5951 3936 1309 583 1953 5381 279 15245 3016 1534 11383 816 1860 5382 4095 2966 4201 4775 4618 4710 4609 4125 3499 4450 3643 4797 6597 5231 3588 3795 4298 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.03 0.00 -0.05 0.01 -0.08 -0.05 -0.05 0.07 -0.08 -0.03 -0.10 -0.06 -0.02 -0.01 0.02 0.01 0.01 0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.01 0.05 0.12 -0.01 0.13 0.19 0.12 0.16 0.21 0.04 -0.04 0.06 0.08 -0.03 -0.04 0.06 0.05 -0.00 0.02 0.01 0.02 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.05 0.07 -0.00 0.13 -0.03 -0.05 -0.01 -0.09 -0.03 -0.03 0.06 0.14 -0.02 0.21 0.14 -0.02 0.04 0.06 0.02 0.01 0.01 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.01 -0.01 -0.06 -0.07 -0.08 0.04 -0.08 0.11 -0.03 -0.03 0.04 -0.05 -0.02 0.02 -0.02 -0.03 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 884

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 867

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 105

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages