Detailed information of deep learning profile BP000415.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in progenitor cell of endocrine pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000415.1
Cell line/tissue: progenitor cell of endocrine pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR901NIN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.12 0.20 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.21 0.10 0.07 0.18 0.11 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4298 3795 3588 5231 6597 4797 3643 4450 3499 4125 4609 4710 4618 4775 4201 2966 4095 5382 1860 816 11383 1534 3016 15245 279 5381 1953 583 1309 3936 5951 2690 3577 5804 3771 5266 4111 4969 4375 4391 4831 5349 4511 4821 4917 4956 4983 4877 4666 4782 ]
C [ 4714 3724 5255 6225 4453 4289 3713 5029 8397 6959 6211 5525 5339 4857 5621 6857 4758 2553 15084 18127 1410 10274 7797 532 120 187 965 498 2413 11538 2930 8855 5755 4618 4300 4175 4345 5083 5747 6320 5623 4851 5136 4967 4832 4962 5035 4963 5239 5057 ]
G [ 4978 6802 6603 3820 4722 4757 4602 4640 3328 3705 4474 4888 4629 4279 4961 3201 6295 8144 1531 442 3050 7165 1796 2402 19091 13763 12020 17888 14022 1920 8810 5109 3147 6065 5472 4905 7451 5428 5435 4206 4541 5158 5388 5331 5395 4991 4959 5303 5356 5124 ]
T [ 5689 5358 4233 4403 3907 5836 7721 5560 4455 4890 4385 4556 5093 5768 4896 6655 4531 3600 1204 294 3836 706 7070 1500 189 348 4741 710 1935 2285 1988 3025 7200 3192 6136 5333 3772 4199 4122 4762 4684 4321 4644 4560 4535 4770 4702 4536 4418 4716 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.02 -0.05 0.04 -0.03 -0.03 0.11 -0.08 0.04 -0.08 -0.07 -0.06 -0.01 0.01 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.01 0.01 0.02 0.06 0.04 -0.02 0.14 0.21 -0.02 0.14 0.06 -0.03 -0.03 -0.09 -0.01 -0.05 -0.03 0.13 -0.00 0.07 0.05 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.02 0.01 0.02 -0.00 0.05 0.06 -0.04 -0.03 0.08 0.06 -0.04 0.04 0.21 0.16 0.12 0.19 0.13 -0.01 0.12 0.05 -0.01 0.03 0.02 0.01 0.04 0.02 ]
T [ 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.06 -0.10 -0.03 -0.08 0.07 -0.05 -0.05 -0.08 0.01 -0.05 0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 884

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 867

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 105

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages