Detailed information of deep learning profile BP000412.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000412.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR876UZD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.02 -0.00 0.03 -0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 0.00 -0.00 0.01 -0.00 ]
C [ -0.00 0.01 0.01 -0.00 0.02 0.08 -0.00 0.14 0.19 0.06 0.08 0.20 0.00 -0.00 0.01 ]
G [ 0.00 0.00 0.01 0.01 0.05 -0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.06 ]
T [ 0.01 -0.00 0.02 -0.00 -0.00 0.02 -0.00 0.00 0.00 -0.00 0.02 0.00 0.11 -0.01 -0.00 ]

Frequency matrix

       
A [ 11 11 13 2 7 10 12 16 16 13 15 14 10 10 10 12 13 9 15 14 14 11 8 7 9 9 14 11 7 8 4 6 20 13 9 15 25 1 37 4 0 5 4 2 19 1 1 4 9 1 ]
C [ 18 19 18 23 20 23 20 24 14 18 22 16 17 24 25 31 28 25 30 30 27 35 37 32 35 38 35 35 42 34 45 43 21 28 38 15 23 22 3 22 35 2 57 60 40 38 60 1 7 24 ]
G [ 20 19 13 14 16 14 14 11 20 15 13 16 15 15 13 10 13 12 11 12 9 7 9 11 9 3 0 3 6 8 7 6 7 12 9 12 5 14 16 33 1 48 1 0 2 1 0 2 37 33 ]
T [ 13 13 18 23 19 15 16 11 12 16 12 16 20 13 14 9 8 16 6 6 12 9 8 12 9 12 13 13 7 12 6 7 14 9 6 20 9 25 6 3 26 7 0 0 1 22 1 55 9 4 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.02 0.04 -0.06 0.05 -0.01 -0.08 -0.03 0.01 -0.06 0.04 -0.09 -0.06 -0.03 0.09 -0.08 ]
C [ 0.00 0.03 -0.01 0.02 0.03 -0.03 0.03 0.14 -0.05 0.15 0.19 0.11 0.13 0.20 0.02 -0.03 0.05 ]
G [ 0.02 0.01 0.01 0.01 0.04 0.06 0.09 -0.05 0.16 -0.05 -0.08 -0.01 -0.09 -0.05 -0.01 0.05 0.12 ]
T [ 0.01 -0.00 0.02 -0.03 0.04 -0.02 -0.03 0.04 -0.02 -0.06 -0.06 -0.08 0.07 -0.08 0.12 -0.01 -0.03 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 20176

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages