Detailed information of deep learning profile BP000411.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial nerve using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000411.1
Cell line/tissue: tibial nerve
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR875NEW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4146 3720 3469 4944 6373 4560 3531 4188 3531 3878 4434 4612 4653 4813 4169 2707 4093 5015 1935 661 11551 1360 2939 14649 327 6890 1294 368 623 2958 7102 1894 2731 6423 3267 5342 3899 4610 4227 3978 4798 5732 3876 4666 4891 5287 4807 4657 4774 4683 ]
C [ 4430 3314 4642 5692 3842 3693 3170 4439 7309 6376 5717 5081 4853 4353 4699 5944 3964 2165 13624 17332 1181 9874 6863 657 103 198 899 207 1205 12736 1359 9236 5813 4398 3948 3521 3445 5009 5932 6842 5704 3979 5064 4302 4328 4155 4238 4437 4636 4622 ]
G [ 4654 6244 6129 3549 4344 4456 4043 4264 3061 3351 4102 4357 4218 3823 4649 3023 5990 7837 1524 257 3010 6544 1673 1929 17866 11125 10393 17584 15081 1001 8923 5231 2052 5496 4754 4114 7765 4968 4623 2998 3262 4902 5036 5081 4765 4237 4355 5148 4948 4933 ]
T [ 5227 5179 4217 4272 3898 5748 7713 5566 4556 4852 4204 4407 4733 5468 4940 6783 4410 3440 1374 207 2715 679 6982 1222 161 244 5871 298 1548 1762 1073 2096 7861 2140 6488 5480 3348 3870 3675 4639 4693 3844 4481 4408 4473 4778 5057 4215 4099 4219 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.05 0.05 -0.06 -0.04 -0.04 -0.01 0.02 -0.02 -0.01 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.10 0.16 -0.02 0.10 0.05 -0.00 -0.02 -0.06 0.00 -0.03 -0.02 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.00 0.01 0.01 0.02 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.05 -0.01 0.02 0.16 0.12 0.09 0.15 0.11 -0.02 0.12 0.04 -0.01 0.03 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 142

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 42

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages