Detailed information of deep learning profile BP000411.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial nerve using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000411.1
Cell line/tissue: tibial nerve
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR875NEW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4219 4099 4215 5057 4778 4473 4408 4481 3844 4693 4639 3675 3870 3348 5480 6488 2140 7861 2096 1073 1762 1548 298 5871 244 161 1222 6982 679 2715 207 1374 3440 4410 6783 4940 5468 4733 4407 4204 4852 4556 5566 7713 5748 3898 4272 4217 5179 5227 ]
C [ 4933 4948 5148 4355 4237 4765 5081 5036 4902 3262 2998 4623 4968 7765 4114 4754 5496 2052 5231 8923 1001 15081 17584 10393 11125 17866 1929 1673 6544 3010 257 1524 7837 5990 3023 4649 3823 4218 4357 4102 3351 3061 4264 4043 4456 4344 3549 6129 6244 4654 ]
G [ 4622 4636 4437 4238 4155 4328 4302 5064 3979 5704 6842 5932 5009 3445 3521 3948 4398 5813 9236 1359 12736 1205 207 899 198 103 657 6863 9874 1181 17332 13624 2165 3964 5944 4699 4353 4853 5081 5717 6376 7309 4439 3170 3693 3842 5692 4642 3314 4430 ]
T [ 4683 4774 4657 4807 5287 4891 4666 3876 5732 4798 3978 4227 4610 3899 5342 3267 6423 2731 1894 7102 2958 623 368 1294 6890 327 14649 2939 1360 11551 661 1935 5015 4093 2707 4169 4813 4653 4612 4434 3878 3531 4188 3531 4560 6373 4944 3469 3720 4146 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.03 0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.01 0.04 0.12 -0.02 0.11 0.15 0.09 0.12 0.16 0.02 -0.01 0.05 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.02 0.01 0.01 0.00 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.02 0.12 -0.02 -0.03 0.00 -0.06 -0.02 -0.00 0.05 0.10 -0.02 0.16 0.10 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.02 0.02 -0.01 -0.04 -0.04 -0.06 0.05 -0.05 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 142

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 42

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages