Detailed information of deep learning profile BP000410.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in H9 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000410.1
Cell line/tissue: H9
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR871MKQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.07 0.13 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.13 0.07 0.05 0.12 0.07 0.00 0.04 0.01 0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 4293 3953 3638 4917 6197 4675 3716 4572 3608 4045 4470 4845 4382 4776 4235 3085 4269 5230 2249 1205 10254 1922 3181 14158 416 4820 2491 686 1488 4280 5640 2782 3654 5842 3660 4929 4067 4796 4388 4329 4708 5133 4427 4791 4945 4841 4742 4710 4687 4671 ]
C [ 4587 3580 4814 5898 4510 4097 3628 4637 7737 6807 5906 5167 5122 4837 5553 6694 4676 2559 13695 16753 1864 9229 7463 553 101 209 967 684 2318 10494 2661 8208 5781 4436 4323 4081 4305 5103 5480 6289 5309 4819 4965 4747 4740 4972 4866 4789 4892 4968 ]
G [ 5187 6220 6599 4023 4485 4845 4592 4498 3432 3557 4336 4551 4758 4167 4643 3216 5635 7791 1807 692 2734 6967 2113 2574 18312 13558 10875 16959 13341 2026 8739 5096 3144 5623 5329 4668 6889 5091 5207 4169 4333 4973 5133 5133 5110 4722 4821 5147 5336 5036 ]
T [ 5044 5358 4060 4273 3919 5494 7175 5404 4334 4702 4399 4548 4849 5331 4680 6116 4531 3531 1360 461 4259 993 6354 1826 282 524 4778 782 1964 2311 2071 3025 6532 3210 5799 5433 3850 4121 4036 4324 4761 4186 4586 4440 4316 4576 4682 4465 4196 4436 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.03 0.02 -0.02 -0.01 0.07 -0.04 0.02 -0.04 -0.04 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.02 -0.01 0.09 0.14 -0.01 0.08 0.04 -0.02 -0.03 -0.04 0.00 -0.03 -0.01 0.08 -0.00 0.05 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.01 -0.00 0.03 0.04 -0.03 -0.04 0.05 0.04 -0.02 0.02 0.13 0.10 0.08 0.12 0.09 0.00 0.08 0.03 -0.00 0.02 0.02 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.03 -0.06 -0.02 -0.05 0.05 -0.02 -0.03 -0.04 0.01 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.02 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 189

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 111

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages