Detailed information of deep learning profile BP000410.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in H9 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000410.1
Cell line/tissue: H9
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR871MKQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.01 0.04 0.00 0.07 0.12 0.05 0.07 0.13 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.13 0.07 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4436 4196 4465 4682 4576 4316 4440 4586 4186 4761 4324 4036 4121 3850 5433 5799 3210 6532 3025 2071 2311 1964 782 4778 524 282 1826 6354 993 4259 461 1360 3531 4531 6116 4680 5331 4849 4548 4399 4702 4334 5404 7175 5494 3919 4273 4060 5358 5044 ]
C [ 5036 5336 5147 4821 4722 5110 5133 5133 4973 4333 4169 5207 5091 6889 4668 5329 5623 3144 5096 8739 2026 13341 16959 10875 13558 18312 2574 2113 6967 2734 692 1807 7791 5635 3216 4643 4167 4758 4551 4336 3557 3432 4498 4592 4845 4485 4023 6599 6220 5187 ]
G [ 4968 4892 4789 4866 4972 4740 4747 4965 4819 5309 6289 5480 5103 4305 4081 4323 4436 5781 8208 2661 10494 2318 684 967 209 101 553 7463 9229 1864 16753 13695 2559 4676 6694 5553 4837 5122 5167 5906 6807 7737 4637 3628 4097 4510 5898 4814 3580 4587 ]
T [ 4671 4687 4710 4742 4841 4945 4791 4427 5133 4708 4329 4388 4796 4067 4929 3660 5842 3654 2782 5640 4280 1488 686 2491 4820 416 14158 3181 1922 10254 1205 2249 5230 4269 3085 4235 4776 4382 4845 4470 4045 3608 4572 3716 4675 6197 4917 3638 3953 4293 ]

Hypothetical CWM

   
A [ 0.01 0.01 -0.02 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.01 -0.04 -0.03 -0.02 0.05 -0.05 -0.02 -0.06 -0.03 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.02 0.02 -0.00 0.03 0.08 0.00 0.09 0.12 0.08 0.10 0.13 0.02 -0.02 0.04 0.05 -0.04 -0.03 0.04 0.03 -0.00 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.03 0.05 -0.00 0.08 -0.01 -0.03 0.00 -0.04 -0.03 -0.02 0.04 0.08 -0.01 0.14 0.09 -0.01 0.02 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.04 -0.04 0.02 -0.04 0.07 -0.01 -0.02 0.02 -0.03 -0.01 0.01 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 189

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 111

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages