Detailed information of deep learning profile BP000409.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in lower lobe of right lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000409.1
Cell line/tissue: lower lobe of right lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR863HZM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4171 3620 3549 5026 6359 4587 3503 4231 3432 3900 4450 4448 4645 4768 4121 2823 4109 5057 2037 806 11241 1473 2948 14764 333 6591 1554 404 610 2908 7118 1903 2785 6330 3334 5413 3967 4723 4122 3948 4704 5699 3953 4667 4811 5151 4759 4775 4759 4731 ]
C [ 4554 3537 4791 5877 4004 3811 3380 4664 7499 6514 5728 5303 4960 4573 5044 6249 4111 2386 13787 17339 1340 9726 7182 640 147 208 976 237 913 13246 1297 9444 5943 4631 4033 3713 3604 5003 5971 6830 5879 4085 5178 4508 4441 4371 4458 4572 4801 4814 ]
G [ 4747 6376 6195 3645 4583 4608 4218 4398 3277 3595 4272 4584 4433 4010 4584 3112 6098 7904 1584 344 3153 6864 1815 2017 18104 11749 10385 17762 15641 818 9174 5367 2164 5577 4955 4126 7827 5104 4919 3327 3460 5052 5169 5142 5021 4498 4602 5178 5095 5018 ]
T [ 5302 5241 4239 4226 3828 5768 7673 5481 4566 4765 4324 4439 4736 5423 5025 6590 4456 3427 1366 285 3040 711 6829 1353 190 226 5859 371 1610 1802 1185 2060 7882 2236 6452 5522 3376 3944 3762 4669 4731 3938 4474 4457 4501 4754 4955 4249 4119 4211 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.09 -0.06 0.05 -0.07 -0.05 -0.06 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.02 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.12 0.18 -0.03 0.11 0.05 -0.01 -0.03 -0.07 -0.01 -0.05 -0.04 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.04 0.05 -0.03 -0.03 0.07 0.05 -0.02 0.02 0.18 0.14 0.11 0.17 0.13 -0.03 0.13 0.05 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ 0.00 0.00 0.01 0.00 0.02 -0.00 -0.02 -0.04 -0.08 -0.03 -0.06 0.06 -0.04 -0.04 -0.08 0.02 -0.05 0.01 -0.03 -0.07 -0.01 0.03 -0.05 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1110

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 135

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 85

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 34

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages