Detailed information of deep learning profile BP000409.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in lower lobe of right lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000409.1
Cell line/tissue: lower lobe of right lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR863HZM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.17 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4211 4119 4249 4955 4754 4501 4457 4474 3938 4731 4669 3762 3944 3376 5522 6452 2236 7882 2060 1185 1802 1610 371 5859 226 190 1353 6829 711 3040 285 1366 3427 4456 6590 5025 5423 4736 4439 4324 4765 4566 5481 7673 5768 3828 4226 4239 5241 5302 ]
C [ 5018 5095 5178 4602 4498 5021 5142 5169 5052 3460 3327 4919 5104 7827 4126 4955 5577 2164 5367 9174 818 15641 17762 10385 11749 18104 2017 1815 6864 3153 344 1584 7904 6098 3112 4584 4010 4433 4584 4272 3595 3277 4398 4218 4608 4583 3645 6195 6376 4747 ]
G [ 4814 4801 4572 4458 4371 4441 4508 5178 4085 5879 6830 5971 5003 3604 3713 4033 4631 5943 9444 1297 13246 913 237 976 208 147 640 7182 9726 1340 17339 13787 2386 4111 6249 5044 4573 4960 5303 5728 6514 7499 4664 3380 3811 4004 5877 4791 3537 4554 ]
T [ 4731 4759 4775 4759 5151 4811 4667 3953 5699 4704 3948 4122 4723 3967 5413 3334 6330 2785 1903 7118 2908 610 404 1554 6591 333 14764 2948 1473 11241 806 2037 5057 4109 2823 4121 4768 4645 4448 4450 3900 3432 4231 3503 4587 6359 5026 3549 3620 4171 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.05 0.03 -0.01 -0.07 -0.03 0.01 -0.05 0.02 -0.08 -0.04 -0.04 0.06 -0.06 -0.03 -0.08 -0.04 -0.02 -0.00 0.02 0.00 0.01 0.00 0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.05 0.13 -0.03 0.13 0.17 0.11 0.14 0.18 0.02 -0.02 0.05 0.07 -0.03 -0.03 0.05 0.04 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.04 -0.05 -0.01 -0.07 -0.03 -0.01 0.05 0.11 -0.03 0.18 0.12 -0.02 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.06 -0.05 -0.07 0.05 -0.06 0.09 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1110

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 135

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 85

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 34

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages