Detailed information of deep learning profile BP000408.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in sigmoid colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000408.1
Cell line/tissue: sigmoid colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR857RJQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.16 0.05 0.06 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4255 4004 4254 5086 4929 4571 4427 4662 3735 4807 4694 3675 3838 3432 5431 6422 2071 7560 1971 1086 1775 1606 311 6142 205 118 969 6941 531 2398 144 1209 3443 4431 6961 4983 5735 4862 4354 4238 4999 4625 5630 8107 5848 3691 4368 4190 5280 5348 ]
C [ 4765 4787 4973 4120 4068 4660 4948 4740 4785 2928 2803 4361 4837 7515 4021 4766 5279 2105 5383 8544 947 14995 17321 10187 10681 17827 1527 1360 6256 2788 168 1152 7831 6038 2732 4433 3633 3978 4141 3999 3135 2786 4050 3851 4325 4228 3239 6128 6172 4504 ]
G [ 4496 4658 4364 4099 4038 4074 4220 4973 3744 5701 6885 5911 5002 3291 3400 3724 4394 5918 8886 1314 12537 1038 226 752 206 84 467 7061 10427 816 17453 14209 1951 3731 5974 4620 4052 4590 5035 5703 6353 7406 4405 2902 3527 3739 5695 4521 3200 4343 ]
T [ 4750 4817 4675 4961 5231 4961 4671 3891 6002 4830 3884 4319 4589 4028 5414 3354 6522 2683 2026 7322 3007 627 408 1185 7174 237 15303 2904 1052 12264 501 1696 5041 4066 2599 4230 4846 4836 4736 4326 3779 3449 4181 3406 4566 6608 4964 3427 3614 4071 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.02 0.00 -0.05 0.02 -0.08 -0.05 -0.04 0.05 -0.06 -0.03 -0.07 -0.04 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.01 0.05 0.12 -0.02 0.12 0.16 0.09 0.12 0.17 0.03 -0.02 0.05 0.08 -0.02 -0.02 0.06 0.04 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.05 0.06 -0.01 0.12 -0.03 -0.04 0.00 -0.06 -0.02 -0.01 0.06 0.11 -0.04 0.18 0.11 -0.01 0.04 0.06 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.05 -0.06 0.09 -0.02 -0.04 0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.00 0.00 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 186

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 181

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 73

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages