Detailed information of deep learning profile BP000408.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in sigmoid colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000408.1
Cell line/tissue: sigmoid colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR857RJQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.06 0.05 0.16 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4071 3614 3427 4964 6608 4566 3406 4181 3449 3779 4326 4736 4836 4846 4230 2599 4066 5041 1696 501 12264 1052 2904 15303 237 7174 1185 408 627 3007 7322 2026 2683 6522 3354 5414 4028 4589 4319 3884 4830 6002 3891 4671 4961 5231 4961 4675 4817 4750 ]
C [ 4343 3200 4521 5695 3739 3527 2902 4405 7406 6353 5703 5035 4590 4052 4620 5974 3731 1951 14209 17453 816 10427 7061 467 84 206 752 226 1038 12537 1314 8886 5918 4394 3724 3400 3291 5002 5911 6885 5701 3744 4973 4220 4074 4038 4099 4364 4658 4496 ]
G [ 4504 6172 6128 3239 4228 4325 3851 4050 2786 3135 3999 4141 3978 3633 4433 2732 6038 7831 1152 168 2788 6256 1360 1527 17827 10681 10187 17321 14995 947 8544 5383 2105 5279 4766 4021 7515 4837 4361 2803 2928 4785 4740 4948 4660 4068 4120 4973 4787 4765 ]
T [ 5348 5280 4190 4368 3691 5848 8107 5630 4625 4999 4238 4354 4862 5735 4983 6961 4431 3443 1209 144 2398 531 6941 969 118 205 6142 311 1606 1775 1086 1971 7560 2071 6422 5431 3432 3838 3675 4694 4807 3735 4662 4427 4571 4929 5086 4254 4004 4255 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.04 -0.04 -0.02 0.09 -0.06 0.05 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.06 0.04 -0.01 0.11 0.18 -0.04 0.11 0.06 -0.01 -0.02 -0.06 0.00 -0.04 -0.03 0.12 -0.01 0.06 0.05 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.04 0.06 -0.02 -0.02 0.08 0.05 -0.02 0.03 0.17 0.12 0.09 0.16 0.12 -0.02 0.12 0.05 -0.01 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.04 -0.07 -0.03 -0.06 0.05 -0.04 -0.05 -0.08 0.02 -0.05 0.00 -0.02 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 186

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 181

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 73

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages