Detailed information of deep learning profile BP000407.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in 22Rv1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000407.1
Cell line/tissue: 22Rv1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR857PBV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.07 0.10 0.04 0.05 0.11 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.03 0.00 0.10 0.05 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3835 3584 3643 3911 3952 3751 3936 3879 3630 3944 3903 3314 3392 3165 4736 5588 2369 6620 2250 1212 1590 1431 413 4744 401 266 1585 5829 822 3321 387 1282 3195 3791 5337 4083 4658 4034 3904 3781 4065 3926 4700 5985 4744 3612 3805 3602 4590 4409 ]
C [ 4539 4748 4645 4401 4389 4582 4616 4693 4463 3771 3518 4841 4657 6442 3976 4467 5238 2212 4496 8484 1145 12813 15551 9178 11342 15909 2362 2194 6243 2969 531 1808 6914 5344 3050 4240 3747 4140 4144 3941 3359 3285 4055 3972 4101 4152 3726 5484 5234 4378 ]
G [ 4319 4493 4329 4235 4286 4193 4333 4390 4086 4869 5576 4952 4458 3681 3673 3748 4122 5063 8169 1685 11004 1674 304 971 275 183 801 6104 7979 1579 14825 11812 2306 4097 5741 4824 4348 4600 4621 5153 5849 6358 4227 3484 3811 3961 5088 4348 3476 4297 ]
T [ 4060 3928 4136 4206 4126 4227 3868 3791 4574 4169 3756 3646 4246 3465 4368 2950 5024 2858 1838 5372 3014 835 485 1860 4735 395 12005 2626 1709 8884 1010 1851 4338 3521 2625 3606 4000 3979 4084 3878 3480 3184 3771 3312 4097 5028 4134 3319 3453 3669 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 -0.00 -0.03 0.02 -0.04 -0.03 -0.02 0.04 -0.04 -0.02 -0.05 -0.02 -0.01 -0.00 0.01 0.00 0.01 ]
C [ 0.01 0.02 0.00 0.01 0.02 -0.01 0.02 0.08 -0.02 0.08 0.11 0.06 0.08 0.11 0.01 -0.01 0.03 0.04 -0.02 -0.02 0.03 0.02 -0.00 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.04 -0.02 0.08 -0.03 -0.03 -0.01 -0.05 -0.02 -0.01 0.03 0.07 -0.01 0.11 0.07 -0.01 0.02 0.03 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.02 -0.02 0.01 -0.01 -0.03 -0.03 -0.04 0.02 -0.04 0.06 -0.01 -0.02 0.02 -0.02 -0.01 0.01 -0.01 -0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1199

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 473

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 369

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 180

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 128

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_2

Num. of seqlets: 74

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_3

Num. of seqlets: 62

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages