Detailed information of deep learning profile BP000407.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in 22Rv1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000407.1
Cell line/tissue: 22Rv1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR857PBV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.05 0.10 0.00 0.03 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.11 0.05 0.04 0.10 0.07 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3669 3453 3319 4134 5028 4097 3312 3771 3184 3480 3878 4084 3979 4000 3606 2625 3521 4338 1851 1010 8884 1709 2626 12005 395 4735 1860 485 835 3014 5372 1838 2858 5024 2950 4368 3465 4246 3646 3756 4169 4574 3791 3868 4227 4126 4206 4136 3928 4060 ]
C [ 4297 3476 4348 5088 3961 3811 3484 4227 6358 5849 5153 4621 4600 4348 4824 5741 4097 2306 11812 14825 1579 7979 6104 801 183 275 971 304 1674 11004 1685 8169 5063 4122 3748 3673 3681 4458 4952 5576 4869 4086 4390 4333 4193 4286 4235 4329 4493 4319 ]
G [ 4378 5234 5484 3726 4152 4101 3972 4055 3285 3359 3941 4144 4140 3747 4240 3050 5344 6914 1808 531 2969 6243 2194 2362 15909 11342 9178 15551 12813 1145 8484 4496 2212 5238 4467 3976 6442 4657 4841 3518 3771 4463 4693 4616 4582 4389 4401 4645 4748 4539 ]
T [ 4409 4590 3602 3805 3612 4744 5985 4700 3926 4065 3781 3904 4034 4658 4083 5337 3791 3195 1282 387 3321 822 5829 1585 266 401 4744 413 1431 1590 1212 2250 6620 2369 5588 4736 3165 3392 3314 3903 3944 3630 3879 3936 3751 3952 3911 3643 3584 3835 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.02 0.02 -0.02 -0.01 0.06 -0.04 0.02 -0.04 -0.03 -0.03 -0.01 0.01 -0.02 -0.02 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.03 0.02 -0.01 0.07 0.11 -0.01 0.07 0.03 -0.01 -0.02 -0.05 -0.01 -0.03 -0.03 0.08 -0.02 0.04 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.01 -0.00 0.02 0.03 -0.02 -0.02 0.04 0.03 -0.01 0.01 0.11 0.08 0.06 0.11 0.08 -0.02 0.08 0.02 -0.01 0.02 0.01 0.00 0.02 0.01 ]
T [ 0.01 0.00 0.01 -0.00 -0.01 -0.02 -0.05 -0.02 -0.04 0.04 -0.02 -0.03 -0.04 0.02 -0.03 -0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1199

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 473

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 369

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 180

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 128

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_2

Num. of seqlets: 74

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_3

Num. of seqlets: 62

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages