Detailed information of deep learning profile BP000406.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in natural killer cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000406.1
Cell line/tissue: natural killer cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR856TKC
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.13 0.06 0.04 0.13 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3380 2985 2730 4199 5618 3887 2857 3608 2796 3164 3710 3865 4172 4107 3611 2241 3329 4227 1538 417 10337 1005 2367 13168 215 5734 911 265 463 2138 6026 1615 2220 5604 2797 4645 3335 4072 3532 3339 4166 5099 3242 3921 4137 4493 4066 3924 3921 3955 ]
C [ 4051 2847 4170 5179 3404 3112 2608 3843 6658 5789 5037 4590 4221 3698 3993 5177 3386 1697 12102 15093 972 8887 6281 510 95 138 647 132 871 11558 1018 8144 5310 3903 3220 3070 2945 4369 5272 6281 5163 3357 4533 3842 3825 3718 3739 3889 4163 4184 ]
G [ 4019 5584 5477 2900 3860 3874 3561 3777 2609 2853 3591 3828 3547 3330 4123 2543 5541 7251 1187 207 2461 5516 1351 1336 15456 9847 9230 15251 13327 756 8006 4531 1765 4674 4357 3612 6815 4327 4079 2483 2652 4240 4292 4334 4122 3679 3840 4537 4411 4257 ]
T [ 4432 4466 3505 3604 3000 5009 6856 4654 3819 4076 3544 3599 3942 4747 4155 5921 3626 2707 1055 165 2112 474 5883 868 116 163 5094 234 1221 1430 832 1592 6587 1701 5508 4555 2787 3114 2999 3779 3901 3186 3815 3785 3798 3992 4237 3532 3387 3486 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.01 -0.01 0.02 -0.00 -0.03 0.04 -0.02 -0.01 0.08 -0.04 0.05 -0.05 -0.03 -0.04 -0.01 0.02 -0.01 -0.01 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.04 0.03 -0.01 0.09 0.14 -0.02 0.09 0.04 -0.00 -0.01 -0.05 -0.00 -0.04 -0.03 0.10 -0.02 0.05 0.03 0.02 0.00 0.00 0.00 0.01 ]
G [ 0.01 0.01 -0.00 0.02 0.05 -0.02 -0.02 0.06 0.04 -0.02 0.01 0.13 0.10 0.08 0.13 0.10 -0.03 0.10 0.03 -0.01 0.02 0.01 -0.00 0.03 0.00 ]
T [ 0.01 0.01 0.02 0.00 -0.01 -0.02 -0.06 -0.02 -0.05 0.05 -0.03 -0.04 -0.06 0.03 -0.03 0.00 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages