Detailed information of deep learning profile BP000406.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in natural killer cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000406.1
Cell line/tissue: natural killer cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR856TKC
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.13 0.04 0.06 0.13 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3486 3387 3532 4237 3992 3798 3785 3815 3186 3901 3779 2999 3114 2787 4555 5508 1701 6587 1592 832 1430 1221 234 5094 163 116 868 5883 474 2112 165 1055 2707 3626 5921 4155 4747 3942 3599 3544 4076 3819 4654 6856 5009 3000 3604 3505 4466 4432 ]
C [ 4257 4411 4537 3840 3679 4122 4334 4292 4240 2652 2483 4079 4327 6815 3612 4357 4674 1765 4531 8006 756 13327 15251 9230 9847 15456 1336 1351 5516 2461 207 1187 7251 5541 2543 4123 3330 3547 3828 3591 2853 2609 3777 3561 3874 3860 2900 5477 5584 4019 ]
G [ 4184 4163 3889 3739 3718 3825 3842 4533 3357 5163 6281 5272 4369 2945 3070 3220 3903 5310 8144 1018 11558 871 132 647 138 95 510 6281 8887 972 15093 12102 1697 3386 5177 3993 3698 4221 4590 5037 5789 6658 3843 2608 3112 3404 5179 4170 2847 4051 ]
T [ 3955 3921 3924 4066 4493 4137 3921 3242 5099 4166 3339 3532 4072 3335 4645 2797 5604 2220 1615 6026 2138 463 265 911 5734 215 13168 2367 1005 10337 417 1538 4227 3329 2241 3611 4107 4172 3865 3710 3164 2796 3608 2857 3887 5618 4199 2730 2985 3380 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.00 -0.03 0.03 -0.06 -0.04 -0.03 0.05 -0.05 -0.02 -0.06 -0.02 -0.01 0.00 0.02 0.01 0.01 ]
C [ 0.00 0.03 -0.00 0.01 0.02 -0.01 0.03 0.10 -0.03 0.10 0.13 0.08 0.10 0.13 0.01 -0.02 0.04 0.06 -0.02 -0.02 0.05 0.02 -0.00 0.01 0.01 ]
G [ 0.01 0.00 0.00 0.00 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.04 -0.00 -0.05 -0.01 -0.00 0.04 0.09 -0.02 0.14 0.09 -0.01 0.03 0.04 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.01 -0.01 0.02 -0.01 -0.04 -0.03 -0.05 0.05 -0.04 0.08 -0.01 -0.02 0.04 -0.03 -0.00 0.02 -0.01 -0.01 0.00 0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages