Detailed information of deep learning profile BP000405.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in RWPE2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000405.1
Cell line/tissue: RWPE2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR856JJB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.07 0.05 0.14 0.09 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5168 4727 4501 5757 6878 5528 4490 4992 4426 4662 5295 5488 5229 5542 4780 3649 4989 5900 2531 1374 12006 2166 3772 15559 461 6691 2234 590 1054 4054 7712 2603 3674 6948 3966 5925 4757 5416 4918 5001 5265 6321 4823 5384 5717 5741 5567 5614 5480 5441 ]
C [ 5016 4243 5344 6052 4677 4611 3994 5263 7792 6985 6274 5671 5622 5077 6005 6947 4786 2965 14895 18888 1805 10380 7276 762 154 260 989 292 1774 13521 2071 9916 6660 5037 4487 4411 4273 5466 6476 7128 6282 4744 5418 5146 4958 5035 5034 5230 5191 5320 ]
G [ 5235 6535 6523 4295 4983 4798 4814 4899 3792 4247 4653 5038 4919 4553 5028 3552 6363 8289 2125 580 3223 7709 2405 2902 20377 13951 11450 19888 16460 1386 9878 5703 2651 6120 5594 4786 7924 5657 5459 3850 4234 5497 5803 5591 5518 5251 5242 5499 5678 5357 ]
T [ 5913 5827 4964 5228 4794 6395 8034 6178 5322 5438 5110 5135 5562 6160 5519 7184 5194 4178 1781 490 4298 1077 7879 2109 340 430 6659 562 2044 2371 1671 3110 8347 3227 7285 6210 4378 4793 4479 5353 5551 4770 5288 5211 5139 5305 5489 4989 4983 5214 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.02 -0.03 -0.02 0.07 -0.05 0.03 -0.06 -0.05 -0.05 -0.02 0.01 -0.02 -0.02 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.15 -0.01 0.10 0.05 -0.00 -0.02 -0.05 -0.01 -0.03 -0.02 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.05 0.04 -0.01 0.03 0.16 0.11 0.09 0.14 0.11 -0.01 0.10 0.03 -0.00 0.03 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.03 -0.06 -0.02 -0.05 0.04 -0.03 -0.03 -0.07 0.02 -0.04 -0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 116

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 43

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages