Detailed information of deep learning profile BP000405.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in RWPE2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000405.1
Cell line/tissue: RWPE2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR856JJB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.09 0.14 0.05 0.07 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5214 4983 4989 5489 5305 5139 5211 5288 4770 5551 5353 4479 4793 4378 6210 7285 3227 8347 3110 1671 2371 2044 562 6659 430 340 2109 7879 1077 4298 490 1781 4178 5194 7184 5519 6160 5562 5135 5110 5438 5322 6178 8034 6395 4794 5228 4964 5827 5913 ]
C [ 5357 5678 5499 5242 5251 5518 5591 5803 5497 4234 3850 5459 5657 7924 4786 5594 6120 2651 5703 9878 1386 16460 19888 11450 13951 20377 2902 2405 7709 3223 580 2125 8289 6363 3552 5028 4553 4919 5038 4653 4247 3792 4899 4814 4798 4983 4295 6523 6535 5235 ]
G [ 5320 5191 5230 5034 5035 4958 5146 5418 4744 6282 7128 6476 5466 4273 4411 4487 5037 6660 9916 2071 13521 1774 292 989 260 154 762 7276 10380 1805 18888 14895 2965 4786 6947 6005 5077 5622 5671 6274 6985 7792 5263 3994 4611 4677 6052 5344 4243 5016 ]
T [ 5441 5480 5614 5567 5741 5717 5384 4823 6321 5265 5001 4918 5416 4757 5925 3966 6948 3674 2603 7712 4054 1054 590 2234 6691 461 15559 3772 2166 12006 1374 2531 5900 4989 3649 4780 5542 5229 5488 5295 4662 4426 4992 4490 5528 6878 5757 4501 4727 5168 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 -0.00 -0.04 0.02 -0.07 -0.03 -0.03 0.04 -0.05 -0.02 -0.06 -0.03 -0.02 -0.01 0.02 0.00 0.01 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.00 0.03 0.10 -0.01 0.11 0.14 0.09 0.11 0.16 0.03 -0.01 0.04 0.05 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.03 -0.01 -0.05 -0.02 -0.00 0.05 0.10 -0.01 0.15 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.02 -0.02 0.01 -0.02 -0.05 -0.05 -0.06 0.03 -0.05 0.07 -0.02 -0.03 0.02 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 116

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 43

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages