Detailed information of deep learning profile BP000404.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000404.1
Cell line/tissue: pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR852BLA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.06 0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 ]
C [ 0.00 0.02 0.00 0.01 0.09 0.14 0.01 0.06 0.01 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 ]
G [ 0.01 -0.00 0.03 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.06 0.05 0.14 0.09 0.00 0.05 0.01 -0.00 0.01 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 33 34 31 29 37 41 39 39 30 35 31 33 32 45 32 24 20 9 14 89 45 22 40 40 17 34 47 42 52 57 40 20 26 48 15 5 133 15 28 147 5 72 8 3 9 18 82 7 23 74 ]
C [ 50 50 50 66 50 60 69 62 60 56 60 46 61 45 51 88 36 22 121 31 47 25 22 75 116 71 59 75 49 38 55 69 25 29 162 187 21 114 78 11 6 10 3 1 16 145 9 106 72 37 ]
G [ 64 65 68 54 56 59 48 57 69 61 55 78 43 64 74 51 19 154 24 33 72 30 60 37 29 29 62 48 52 50 52 9 116 96 10 1 18 60 18 24 180 106 111 185 150 12 95 61 20 71 ]
T [ 48 46 46 46 52 35 39 37 36 43 49 38 59 41 38 32 120 10 36 42 31 118 73 43 33 61 27 30 42 50 48 97 28 22 8 2 23 6 71 13 4 7 73 6 20 20 9 21 80 13 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.01 -0.01 -0.03 -0.02 0.02 -0.01 -0.03 0.03 -0.03 -0.02 0.08 -0.05 0.04 -0.06 -0.04 -0.04 -0.01 0.03 -0.02 -0.02 0.03 ]
C [ 0.02 0.01 0.01 0.02 0.06 0.02 0.00 0.11 0.14 -0.02 0.10 0.04 -0.01 -0.01 -0.06 -0.00 -0.04 -0.03 0.10 -0.02 0.05 0.03 0.02 ]
G [ 0.01 0.01 0.01 0.02 -0.01 0.04 0.04 -0.03 -0.02 0.06 0.03 -0.02 0.02 0.15 0.11 0.09 0.14 0.10 -0.02 0.10 0.04 -0.01 0.02 ]
T [ -0.00 0.01 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.07 -0.02 -0.05 0.05 -0.04 -0.05 -0.06 0.01 -0.04 0.00 -0.03 -0.06 -0.02 0.03 -0.04 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 18407

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 143

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages