Detailed information of deep learning profile BP000404.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000404.1
Cell line/tissue: pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR852BLA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.01 -0.00 0.01 0.05 0.00 0.09 0.14 0.05 0.06 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.03 -0.00 0.01 ]
G [ 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.01 0.06 0.01 0.14 0.09 0.01 0.00 0.02 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 0.00 0.06 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 13 80 21 9 20 20 6 73 7 4 13 71 6 23 2 8 22 28 97 48 50 42 30 27 61 33 43 73 118 31 42 36 10 120 32 38 41 59 38 49 43 36 37 39 35 52 46 46 46 48 ]
C [ 71 20 61 95 12 150 185 111 106 180 24 18 60 18 1 10 96 116 9 52 50 52 48 62 29 29 37 60 30 72 33 24 154 19 51 74 64 43 78 55 61 69 57 48 59 56 54 68 65 64 ]
G [ 37 72 106 9 145 16 1 3 10 6 11 78 114 21 187 162 29 25 69 55 38 49 75 59 71 116 75 22 25 47 31 121 22 36 88 51 45 61 46 60 56 60 62 69 60 50 66 50 50 50 ]
T [ 74 23 7 82 18 9 3 8 72 5 147 28 15 133 5 15 48 26 20 40 57 52 42 47 34 17 40 40 22 45 89 14 9 20 24 32 45 32 33 31 35 30 39 39 41 37 29 31 34 33 ]

Hypothetical CWM

   
A [ -0.04 0.03 -0.02 -0.06 -0.03 0.00 -0.04 0.01 -0.06 -0.05 -0.04 0.05 -0.05 -0.02 -0.07 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.01 -0.00 ]
C [ 0.02 -0.01 0.04 0.10 -0.02 0.10 0.14 0.09 0.11 0.15 0.02 -0.02 0.03 0.06 -0.02 -0.03 0.04 0.04 -0.01 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.04 -0.00 -0.06 -0.01 -0.01 0.04 0.10 -0.02 0.14 0.11 0.00 0.02 0.06 0.02 0.01 0.01 0.02 ]
T [ 0.03 -0.02 -0.02 0.03 -0.01 -0.04 -0.04 -0.06 0.04 -0.05 0.08 -0.02 -0.03 0.03 -0.03 -0.01 0.02 -0.02 -0.03 -0.01 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 18407

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 143

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages