Detailed information of deep learning profile BP000403.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000403.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR851SOK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.02 -0.00 -0.00 -0.01 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.01 -0.00 0.01 0.05 -0.00 0.09 0.16 0.07 0.07 0.18 0.00 -0.00 0.01 0.00 0.00 -0.00 0.02 0.02 -0.00 0.00 ]
G [ 0.00 0.01 0.04 0.00 0.08 0.00 0.00 -0.00 0.00 0.00 -0.00 0.01 0.07 0.00 0.18 0.10 0.00 0.00 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 14 64 19 12 30 19 4 49 9 2 12 50 5 18 3 14 25 34 64 39 50 36 32 29 38 21 44 65 90 24 24 31 7 109 28 25 25 30 33 39 34 31 33 29 39 33 40 34 42 33 ]
C [ 47 11 33 60 12 97 117 73 73 120 16 10 40 15 1 2 53 60 10 24 13 27 28 41 16 14 21 31 10 45 9 6 118 6 22 52 37 38 34 25 26 33 31 31 35 34 26 27 28 32 ]
G [ 22 33 63 8 69 14 5 3 4 4 4 49 76 7 119 94 19 16 40 32 28 27 39 29 43 81 39 11 14 18 17 83 4 8 62 36 27 36 30 27 40 31 36 31 22 28 29 30 32 31 ]
T [ 50 25 18 53 22 3 7 8 47 7 101 24 12 93 10 23 36 23 19 38 42 43 34 34 36 17 29 26 19 46 83 13 4 10 21 20 44 29 36 42 33 38 33 42 37 38 38 42 31 37 ]

Hypothetical CWM

   
A [ -0.05 0.03 -0.02 -0.07 -0.03 0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.06 -0.06 -0.03 -0.07 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.03 -0.01 0.04 0.12 -0.02 0.12 0.17 0.12 0.13 0.19 0.03 -0.02 0.06 0.08 -0.02 -0.02 0.05 0.06 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.03 0.05 0.08 0.00 0.14 -0.01 -0.03 -0.01 -0.04 -0.02 0.00 0.05 0.13 -0.02 0.19 0.14 -0.00 0.03 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.08 0.04 -0.05 0.09 -0.02 -0.03 0.04 -0.04 -0.02 0.02 -0.02 -0.03 -0.01 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19019

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 626

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 160

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 122

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages