Detailed information of deep learning profile BP000403.1

  1. Home
  2. Deep Learning Profile > BP000403.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000403.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR851SOK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.02 -0.00 -0.00 -0.01 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.01 -0.00 0.01 0.05 -0.00 0.09 0.16 0.07 0.07 0.18 0.00 -0.00 0.01 0.00 0.00 -0.00 0.02 0.02 -0.00 0.00 ]
G [ 0.00 0.01 0.04 0.00 0.08 0.00 0.00 -0.00 0.00 0.00 -0.00 0.01 0.07 0.00 0.18 0.10 0.00 0.00 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 14 64 19 12 30 19 4 49 9 2 12 50 5 18 3 14 25 34 64 39 50 36 32 29 38 21 44 65 90 24 24 31 7 109 28 25 25 30 33 39 34 31 33 29 39 33 40 34 42 33 ]
C [ 47 11 33 60 12 97 117 73 73 120 16 10 40 15 1 2 53 60 10 24 13 27 28 41 16 14 21 31 10 45 9 6 118 6 22 52 37 38 34 25 26 33 31 31 35 34 26 27 28 32 ]
G [ 22 33 63 8 69 14 5 3 4 4 4 49 76 7 119 94 19 16 40 32 28 27 39 29 43 81 39 11 14 18 17 83 4 8 62 36 27 36 30 27 40 31 36 31 22 28 29 30 32 31 ]
T [ 50 25 18 53 22 3 7 8 47 7 101 24 12 93 10 23 36 23 19 38 42 43 34 34 36 17 29 26 19 46 83 13 4 10 21 20 44 29 36 42 33 38 33 42 37 38 38 42 31 37 ]

Hypothetical CWM

   
A [ -0.05 0.03 -0.02 -0.07 -0.03 0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.06 -0.06 -0.03 -0.07 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.03 -0.01 0.04 0.12 -0.02 0.12 0.17 0.12 0.13 0.19 0.03 -0.02 0.06 0.08 -0.02 -0.02 0.05 0.06 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.03 0.05 0.08 0.00 0.14 -0.01 -0.03 -0.01 -0.04 -0.02 0.00 0.05 0.13 -0.02 0.19 0.14 -0.00 0.03 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.08 0.04 -0.05 0.09 -0.02 -0.03 0.04 -0.04 -0.02 0.02 -0.02 -0.03 -0.01 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19019

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 626

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 160

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 122

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages