Detailed information of deep learning profile BP000402.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in 22Rv1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000402.1
Cell line/tissue: 22Rv1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR847XGE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ -0.00 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.11 0.03 0.05 0.11 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.03 0.00 0.10 0.05 -0.00 0.00 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3752 3763 3806 3493 3909 3848 3907 3675 3804 3905 3583 4157 3830 3278 3339 3228 4865 5712 2201 6617 2102 1081 1493 1352 337 5131 367 240 1594 5762 872 3245 444 1297 3134 4059 5302 4032 4598 4055 4039 3867 3983 3925 4632 5762 4736 3614 3809 3641 ]
C [ 4596 4703 4664 5017 4560 4313 4295 4780 4575 4621 4493 3645 3497 4796 4504 6672 3821 4403 5143 2134 4250 8869 918 13360 15818 8893 11025 15854 2252 2250 6098 2934 809 1846 7004 5168 3218 4163 3730 4229 4146 3955 3589 3442 3927 4269 4232 4135 3873 5521 ]
G [ 4585 4171 4243 4318 4199 4445 4434 4153 4166 4631 4201 4792 5806 4817 4625 3505 3643 3815 4051 5348 8583 1436 11426 1302 219 967 229 170 800 6019 7988 1986 14423 11408 2307 3970 5624 4759 4437 4520 4661 5047 5732 6191 4243 3402 3682 4001 4976 4320 ]
T [ 3815 4111 4035 3920 4080 4142 4112 4140 4203 3591 4471 4154 3615 3857 4280 3343 4419 2818 5353 2649 1813 5362 2911 734 374 1757 5127 484 12102 2717 1790 8583 1072 2197 4303 3551 2604 3794 3983 3944 3902 3879 3444 3190 3946 3315 4098 4998 4090 3266 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.02 -0.04 -0.02 -0.02 0.04 -0.04 -0.01 -0.05 -0.02 -0.01 -0.00 0.01 0.00 0.01 0.00 0.00 ]
C [ 0.01 0.03 -0.00 0.01 0.02 -0.01 0.02 0.09 -0.02 0.08 0.11 0.06 0.08 0.11 0.01 -0.01 0.03 0.04 -0.02 -0.02 0.03 0.02 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.05 -0.02 0.09 -0.02 -0.03 -0.01 -0.05 -0.02 -0.01 0.03 0.07 -0.01 0.11 0.07 -0.01 0.02 0.03 0.01 0.01 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.03 -0.03 -0.04 0.03 -0.04 0.06 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.01 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1021

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 588

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 420

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 345

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 317

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 163

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages