Detailed information of deep learning profile BP000402.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in 22Rv1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000402.1
Cell line/tissue: 22Rv1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR847XGE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.05 0.10 0.00 0.03 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.11 0.05 0.03 0.11 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 -0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 3266 4090 4998 4098 3315 3946 3190 3444 3879 3902 3944 3983 3794 2604 3551 4303 2197 1072 8583 1790 2717 12102 484 5127 1757 374 734 2911 5362 1813 2649 5353 2818 4419 3343 4280 3857 3615 4154 4471 3591 4203 4140 4112 4142 4080 3920 4035 4111 3815 ]
C [ 4320 4976 4001 3682 3402 4243 6191 5732 5047 4661 4520 4437 4759 5624 3970 2307 11408 14423 1986 7988 6019 800 170 229 967 219 1302 11426 1436 8583 5348 4051 3815 3643 3505 4625 4817 5806 4792 4201 4631 4166 4153 4434 4445 4199 4318 4243 4171 4585 ]
G [ 5521 3873 4135 4232 4269 3927 3442 3589 3955 4146 4229 3730 4163 3218 5168 7004 1846 809 2934 6098 2250 2252 15854 11025 8893 15818 13360 918 8869 4250 2134 5143 4403 3821 6672 4504 4796 3497 3645 4493 4621 4575 4780 4295 4313 4560 5017 4664 4703 4596 ]
T [ 3641 3809 3614 4736 5762 4632 3925 3983 3867 4039 4055 4598 4032 5302 4059 3134 1297 444 3245 872 5762 1594 240 367 5131 337 1352 1493 1081 2102 6617 2201 5712 4865 3228 3339 3278 3830 4157 3583 3905 3804 3675 3907 3848 3909 3493 3806 3763 3752 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.01 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.06 -0.04 0.03 -0.04 -0.03 -0.03 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.03 0.02 -0.01 0.07 0.11 -0.01 0.07 0.03 -0.01 -0.02 -0.05 -0.01 -0.03 -0.02 0.09 -0.02 0.05 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.00 0.00 0.01 -0.00 0.02 0.03 -0.02 -0.02 0.04 0.03 -0.01 0.01 0.11 0.08 0.06 0.11 0.08 -0.02 0.09 0.02 -0.01 0.02 0.01 -0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.00 0.01 -0.00 -0.01 -0.02 -0.05 -0.01 -0.04 0.04 -0.02 -0.02 -0.04 0.02 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1021

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 588

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 420

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 345

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 317

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 163

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages