Detailed information of deep learning profile BP000400.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in ascending aorta using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000400.1
Cell line/tissue: ascending aorta
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR846JKO
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.07 0.06 0.18 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4804 4361 4035 5775 7298 5283 4144 4884 4023 4490 5159 5340 5440 5563 4776 3246 4731 5783 2263 1100 12993 1651 3488 17195 354 7743 1668 482 748 3524 8179 2118 3144 7387 3776 6141 4555 5354 4839 4582 5542 6600 4498 5374 5602 5959 5526 5417 5493 5447 ]
C [ 5291 4114 5569 6620 4642 4387 3875 5319 8671 7454 6639 6022 5641 5131 5758 7121 4646 2680 16053 19823 1474 11423 8222 685 121 258 1000 222 1399 14875 1597 10617 6932 5274 4627 4259 4063 5803 6964 7983 6824 4727 5904 5102 5046 5049 5076 5308 5505 5489 ]
G [ 5490 7155 7091 4229 5243 5295 4924 5122 3610 4053 4887 5131 5046 4597 5469 3611 7071 9214 1756 383 3754 7733 2034 2223 20888 13292 12252 20493 17636 1159 10499 6413 2536 6347 5728 4850 9033 5905 5445 3683 3842 5813 5958 5991 5757 5121 5297 6008 5870 5689 ]
T [ 5995 5950 4885 4956 4397 6615 8637 6255 5276 5583 4895 5087 5453 6289 5577 7602 5132 3903 1508 274 3359 773 7836 1477 217 287 6660 383 1797 2022 1305 2432 8968 2572 7449 6330 3929 4518 4332 5332 5372 4440 5220 5113 5175 5451 5681 4847 4712 4955 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.10 -0.06 0.05 -0.07 -0.05 -0.06 -0.01 0.03 -0.03 -0.03 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.06 0.04 -0.01 0.12 0.19 -0.03 0.12 0.06 -0.01 -0.03 -0.07 -0.00 -0.05 -0.04 0.14 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.04 0.06 -0.03 -0.03 0.07 0.05 -0.02 0.03 0.19 0.14 0.11 0.18 0.13 -0.03 0.14 0.05 -0.01 0.03 0.02 0.00 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.07 -0.04 -0.04 -0.08 0.02 -0.05 0.01 -0.03 -0.07 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages