Detailed information of deep learning profile BP000400.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in ascending aorta using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000400.1
Cell line/tissue: ascending aorta
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR846JKO
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.18 0.06 0.07 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4955 4712 4847 5681 5451 5175 5113 5220 4440 5372 5332 4332 4518 3929 6330 7449 2572 8968 2432 1305 2022 1797 383 6660 287 217 1477 7836 773 3359 274 1508 3903 5132 7602 5577 6289 5453 5087 4895 5583 5276 6255 8637 6615 4397 4956 4885 5950 5995 ]
C [ 5689 5870 6008 5297 5121 5757 5991 5958 5813 3842 3683 5445 5905 9033 4850 5728 6347 2536 6413 10499 1159 17636 20493 12252 13292 20888 2223 2034 7733 3754 383 1756 9214 7071 3611 5469 4597 5046 5131 4887 4053 3610 5122 4924 5295 5243 4229 7091 7155 5490 ]
G [ 5489 5505 5308 5076 5049 5046 5102 5904 4727 6824 7983 6964 5803 4063 4259 4627 5274 6932 10617 1597 14875 1399 222 1000 258 121 685 8222 11423 1474 19823 16053 2680 4646 7121 5758 5131 5641 6022 6639 7454 8671 5319 3875 4387 4642 6620 5569 4114 5291 ]
T [ 5447 5493 5417 5526 5959 5602 5374 4498 6600 5542 4582 4839 5354 4555 6141 3776 7387 3144 2118 8179 3524 748 482 1668 7743 354 17195 3488 1651 12993 1100 2263 5783 4731 3246 4776 5563 5440 5340 5159 4490 4023 4884 4144 5283 7298 5775 4035 4361 4804 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.07 -0.03 0.01 -0.05 0.02 -0.08 -0.04 -0.04 0.07 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.01 0.05 0.14 -0.03 0.13 0.18 0.11 0.14 0.19 0.03 -0.02 0.05 0.07 -0.03 -0.03 0.06 0.04 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.14 -0.04 -0.05 -0.00 -0.07 -0.03 -0.01 0.06 0.12 -0.03 0.19 0.12 -0.01 0.04 0.06 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.03 -0.03 0.03 -0.01 -0.06 -0.05 -0.07 0.05 -0.06 0.10 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 0.00 0.00 0.01 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages