Detailed information of deep learning profile BP000399.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000399.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR841XDW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.18 0.07 0.05 0.17 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3384 4547 5832 4155 3351 3955 3366 3660 4100 4148 4324 4493 3858 2640 3925 4592 1920 735 10839 1475 2894 13724 276 6593 1267 215 438 2758 6736 1705 2469 6048 2996 4940 3782 4388 3863 3811 4500 5371 3675 4381 4515 4836 4559 4466 4414 4416 4433 4256 ]
C [ 4291 5187 3660 3499 3027 4286 6493 5765 5089 4769 4394 4058 4432 5504 3736 2119 12525 15914 1057 8330 6357 463 58 120 671 52 592 12195 879 8607 5463 3947 3532 3247 3124 4455 5445 6130 5255 3633 4634 4033 3939 3902 4081 4098 4349 4278 4294 4316 ]
G [ 5500 3355 4028 4098 3880 3975 2939 3256 3951 4100 3981 3582 4297 2831 5391 7173 1365 249 2484 6657 1565 1661 16648 10225 9412 16688 14815 652 8431 4954 1882 5079 4441 3756 6988 4561 4362 2806 2975 4457 4568 4582 4483 3942 3884 4533 4527 4457 4352 4520 ]
T [ 3941 4027 3596 5364 6858 4900 4318 4435 3976 4099 4417 4983 4529 6141 4064 3232 1306 218 2736 654 6300 1268 134 178 5766 161 1271 1511 1070 1850 7302 2042 6147 5173 3222 3712 3446 4369 4386 3655 4239 4120 4179 4436 4592 4019 3826 3965 4037 4024 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.09 -0.05 0.05 -0.07 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.01 0.03 0.06 0.04 -0.01 0.12 0.19 -0.01 0.13 0.06 0.00 -0.01 -0.06 0.01 -0.04 -0.03 0.13 -0.01 0.07 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.06 -0.02 -0.02 0.09 0.06 -0.01 0.03 0.19 0.14 0.11 0.18 0.13 -0.02 0.13 0.05 0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ 0.00 -0.00 0.01 0.01 0.02 -0.00 -0.01 -0.04 -0.08 -0.03 -0.06 0.06 -0.03 -0.04 -0.08 0.02 -0.04 0.01 -0.03 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3670

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 516

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 163

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages